plotFluxPathways not plotting

[j3mdamas]

pyemma was updated to 2.3, maybe our call it outdated?

I noticed that the problem was in pyemma 2.2. Reported here markovmodel/PyEMMA#1032. I was using PyEMMA tutorial to test the plot_flux command we call with plotFluxPathways. With v2.2 it didn't work, but cloning the repo and using the latest, it works (the tutorial with plot_flux).

Going back to our plotFluxPathways, now using the latest pyemma (which by the way isn't on omnia, markovmodel/PyEMMA#1033), I get no plot and the following:

/home/joao/maindisk/software/repos/markovmodel/PyEMMA/build/lib.linux-x86_64-3.5/pyemma/plots/networks.py:544: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison
  if state_labels == 'auto':

I am guessing that the new plot_flux does not like the state_labels we are passing? Changing it to 'auto' gets rid of the Warning, but still no plot.

@stefdoerr, maybe the mapping of the sets is failing? I'm really surprised the plot does not show but there is no error or traceback...

[stefdoerr]

At 2.2.7 it works fine for me.

[j3mdamas]

could you think of any reason why it does not work for me? do I need a fresh conda installation, maybe?

[stefdoerr]

Works fine in 2.3 as well.
I will need a test case that can be replicated.

[j3mdamas]

I am going to try a fresh installation, and then provide an example if it does not solve it

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On Thu, Feb 2, 2017 at 4:54 PM, Stefan Doerr ***@***.***> wrote: Works fine in 2.3 as well. I will need a test case. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#246 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AKTzQqNOijsLp0HkEOon3bvSAaz-DzZvks5rYfwjgaJpZM4L0Z6d> .

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