cleanup

Author: stefdoerr

Diff for: moleculekit/vmdviewer.py

@@ -10,7 +10,6 @@
 import queue
 import time
 import os
-import sys
 from moleculekit.util import string_to_tempfile
 import numpy as np
 import tempfile
@@ -24,7 +23,7 @@
 
 def _enqueue_output(obj, vmd, queue):
     while vmd.poll() is None:
-        line = vmd.stdout.readline()
+        _ = vmd.stdout.readline()
     # print("READIN: [" + line.decode("ascii") + "]", end="" );
     # 			queue.put(line.decode("ascii"))
     # 	print( "Process finished" )

Diff for: moleculekit/writers.py

@@ -608,7 +608,7 @@ def SDFwrite(mol, filename):
 
         for i in range(mol.bonds.shape[0]):
             fh.write(
-                f"{mol.bonds[i, 0]+1:>3}{mol.bonds[i, 1]+1:>3}  {bondmap[mol.bondtype[i]]}  0  0  0  0\n"
+                f"{mol.bonds[i, 0] + 1:>3}{mol.bonds[i, 1] + 1:>3}  {bondmap[mol.bondtype[i]]}  0  0  0  0\n"
             )
 
         if len(charges):