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modules.json
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{
"name": "nf-core/rnaseq",
"homePage": "https://github.com/nf-core/rnaseq",
"repos": {
"nf-core/modules": {
"git_url": "https://github.com/nf-core/modules.git",
"modules": {
"bbmap/bbsplit": {
"branch": "master",
"git_sha": "848ee9a215d02d80be033bfa60881700f2bd914c"
},
"cat/fastq": {
"branch": "master",
"git_sha": "e9bc33485e420b51cfbed3cf63ac7463cd5739d3"
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "82501fe6d0d12614db67751d30af98d16e63dc59"
},
"custom/getchromsizes": {
"branch": "master",
"git_sha": "213403187932dbbdd936a04474cc8cd8abae7a08"
},
"fastqc": {
"branch": "master",
"git_sha": "49b18b1639f4f7104187058866a8fab33332bdfe"
},
"gffread": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"gunzip": {
"branch": "master",
"git_sha": "90aef30f432332bdf0ce9f4b9004aa5d5c4960bb"
},
"hisat2/align": {
"branch": "master",
"git_sha": "4eed099a12a7d586ce830a662a33a9df5bd67a24"
},
"hisat2/build": {
"branch": "master",
"git_sha": "4eed099a12a7d586ce830a662a33a9df5bd67a24"
},
"hisat2/extractsplicesites": {
"branch": "master",
"git_sha": "4eed099a12a7d586ce830a662a33a9df5bd67a24"
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "682f789f93070bd047868300dd018faf3d434e7c"
},
"preseq/lcextrap": {
"branch": "master",
"git_sha": "90aef30f432332bdf0ce9f4b9004aa5d5c4960bb"
},
"qualimap/rnaseq": {
"branch": "master",
"git_sha": "82501fe6d0d12614db67751d30af98d16e63dc59"
},
"rsem/calculateexpression": {
"branch": "master",
"git_sha": "1b5d3f5ac2ae61ee35dece20a2aeb8018b6438ce"
},
"rsem/preparereference": {
"branch": "master",
"git_sha": "1b5d3f5ac2ae61ee35dece20a2aeb8018b6438ce"
},
"rseqc/bamstat": {
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},
"rseqc/inferexperiment": {
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},
"rseqc/innerdistance": {
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"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/junctionannotation": {
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},
"rseqc/junctionsaturation": {
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},
"rseqc/readdistribution": {
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},
"rseqc/readduplication": {
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},
"rseqc/tin": {
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},
"salmon/index": {
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},
"salmon/quant": {
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"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"samtools/flagstat": {
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},
"samtools/idxstats": {
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},
"samtools/index": {
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},
"samtools/sort": {
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},
"samtools/stats": {
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},
"sortmerna": {
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},
"star/align": {
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},
"star/genomegenerate": {
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},
"stringtie/stringtie": {
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},
"subread/featurecounts": {
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},
"trimgalore": {
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},
"ucsc/bedclip": {
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},
"ucsc/bedgraphtobigwig": {
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},
"umitools/dedup": {
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},
"umitools/extract": {
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},
"untar": {
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}
}
}
}
}