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Output realignment for inspection #187

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bwubb opened this issue Sep 12, 2023 · 0 comments
Open

Output realignment for inspection #187

bwubb opened this issue Sep 12, 2023 · 0 comments

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@bwubb
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bwubb commented Sep 12, 2023

Greetings,

Vardict is finding some large indels for us; some that are not found by other methods. I was curious if there was anyway to get a bam output for the variants after vardict local realignments. They are obviously not represented in our BWA aligned data. Thank you.
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