Update Singularity

Update Singularity to run with Python 3.8.

Author: jeannegot

recipes/Singularity

@@ -28,7 +28,7 @@ apt-get -y update && \
     libffi-dev \
     libxm4 \
     r-base \
-    python3.7-dev \
+    python3-dev \
     python3-pip \
     iputils-ping \
     screen \
@@ -65,16 +65,21 @@ apt-get -y update && \
     /bin/echo "Data=Data=/external_folder_blast/blast/data" >> ~/.ncbirc;\
     R -e "install.packages('https://cran.r-project.org/src/contrib/Archive/pvclust/pvclust_2.0-0.tar.gz', repos=NULL, type='source', dependencies=TRUE)";\
     R -e "install.packages('ape', dependencies=TRUE)";\
-    python3.7 -m pip install --upgrade pip;\
-    python3.7 -m pip install --upgrade setuptools;\
+    python3 -m pip install --upgrade pip;\
+    python3 -m pip install --upgrade setuptools;\
     cd /programs;\
     git clone https://github.com/AuReMe/padmet.git;\
     cd padmet;\
-    python3.7 -m pip install -e .;\
+    python3 -m pip install -e .;\
     cd ../;\
-    python3.7 -m pip install scipy;\
-    python3.7 -m pip install requests;\
-    python3.7 -m pip install aucome;\
+    python3 -m pip install scipy;\
+    python3 -m pip install requests;\
+    python3 -m pip install subprocess32;\
+    cd /programs/;\
+    git clone https://github.com/AuReMe/aucome.git;\
+    cd aucome;\
+    python3 -m pip install -r requirements.txt ;\
+    python3 -m pip install -e .;\    
     cd /opt;\
     wget https://github.com/davidemms/OrthoFinder/releases/download/2.5.4/OrthoFinder.tar.gz;\
     tar xzf OrthoFinder.tar.gz;\