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Improved descriptions with the help of ChatGPT to showcase how to define terms
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bam_masterdata/datamodel/vocabulary_types.py

Lines changed: 42 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -78428,61 +78428,88 @@ class OrganismFootnoteZkbs(VocabularyType):
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class OrganismGroup(VocabularyType):
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defs = VocabularyTypeDef(
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code="ORGANISM_GROUP",
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description="""Organism group assignment according to the central comission of biological safety or category in the BAM-Biomicrosearch//Organismen Gruppenzuordnung anhand ZKBS bzw. die Kategorie in der BAM-Microsearch Datenbank database//Organismen Gruppenzuordnung anhand ZKBS bzw. die Kategorie in der BAM-Microsearch Datenbank""",
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description="""
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Controlled vocabulary for categorizing organisms according to the central commission of biology safety or category in the BAM-Biomicrosearch.
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""",
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)
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archaea = VocabularyTerm(
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code="ARCHAEA",
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label="ARCHAEA",
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description="""Archaea//Archaeen""",
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description="""
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Single-celled prokaryotic microorganisms distinct from bacteria, often found in extreme
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environments.
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""",
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)
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bacteria = VocabularyTerm(
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code="BACTERIA",
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label="BACTERIA",
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description="""Bacteria//Bakterien""",
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description="""
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Single-celled prokaryotic microorganisms that lack a nucleus and are ubiquitous in many
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habitats.
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""",
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)
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eukaryotic_microorganisms = VocabularyTerm(
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code="EUKARYOTIC_MICROORGANISMS",
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label="EUKARYOTIC_MICROORGANISMS",
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description="""Eukaryotic Microorganismes//Eukaryotische Mikroorganismen""",
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description="""
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Eukaryotic microorganisms (e.g. protists, microalgae). These are eukaryotic single-celled
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(or simple multicellular) organisms. Includes protists, microalgae.
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""",
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)
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fungi = VocabularyTerm(
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code="FUNGI",
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label="FUNGI",
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description="""Fungi//Pilze""",
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description="""
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Eukaryotic organisms that include unicellular and multicellular forms and absorb nutrients
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from their environment. Includes yeasts, molds.
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""",
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)
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insects = VocabularyTerm(
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code="INSECTS",
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label="INSECTS",
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description="""Insects//Insekten""",
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)
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other = VocabularyTerm(
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code="OTHER",
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label="OTHER",
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description="""other Organisms//andere Organismen""",
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description="""
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Arthropods having a segmented body, three pairs of legs, typically wings and antennae.
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""",
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)
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tse_agents = VocabularyTerm(
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code="TSE-AGENTS",
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label="TSE-AGENTS",
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description="""TSE-Agents//TSE-Agenzien""",
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description="""
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Transmissible spongiform encephalopathy (TSE) agents. Infectious proteinaceous particles
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(prions) implicated in prion diseases.
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""",
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)
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viroid = VocabularyTerm(
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code="VIROID",
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label="VIROID",
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description="""Viroids//Viroide""",
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description="""
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Infectious, small circular RNA molecules without a protein coat that can cause disease
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in plants.
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""",
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)
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virus = VocabularyTerm(
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code="VIRUS",
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label="VIRUS",
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description="""Virus//Viren""",
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description="""
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Infectious agents composed of genetic material (RNA or DNA) enclosed in a protein capsid,
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sometimes with an envelope, which replicate inside host cells.
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""",
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)
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other = VocabularyTerm(
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code="OTHER",
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label="OTHER",
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description="""
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Any organism not covered by the above categories (e.g. multicellular animals, plants, etc.).
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""",
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)
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