Simple tutorial to run this nextflow

[bpavie]

Hi,

I tried to run the nextflow but it seems to get stuck.

What I did:

git clone https://github.com/BioImageTools/ome-zarr-image-analysis-nextflow.git
cd ome-zarr-image-analysis-nextflow/
nextflow run .

 N E X T F L O W   ~  version 24.04.4

Launching `./main.nf` [silly_caravaggio] DSL2 - revision: 731ab8488d

WARN: Access to undefined parameter `images` -- Initialise it to a default value eg. `params.images = some_value`
[-        ] BLUR        -
[-        ] SEGMENT     -
[-        ] MORPHOMETRY -

And then it get stuck. I am probably doing something wrong but not sure exactly what. I tried on my local computer and on my University HPC with the same result

Benjamin

[BioinfoTongLI]

Hi @bpavie! I've just updated the README. Could you please update your local repo and follow the new README. Please lmk if it work!

Best,