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Description
MRE
import caveclient as cc
from nglui.statebuilder import make_neuron_neuroglancer_link
client = cc.CAVEclient("minnie65_phase3_v1")
# works
make_neuron_neuroglancer_link(client, 864691135941359220)
# breaks
make_neuron_neuroglancer_link(client, 864691135941359220, show_inputs=True)
# also breaks
make_neuron_neuroglancer_link(client, 864691135941359220, show_outputs=True)
Output
Traceback (most recent call last):
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/sandbox/nglui_mre.py", line 10, in <module>
make_neuron_neuroglancer_link(client, 864691135941359220, show_inputs=True)
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/helpers.py", line 630, in make_neuron_neuroglancer_link
return package_state(dataframes, sb, client, shorten, return_as, ngl_url, link_text)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/helpers.py", line 374, in package_state
url = make_url_robust(df, sb, client, shorten=shorten, ngl_url=ngl_url)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/helpers.py", line 329, in make_url_robust
url = make_state_url(df, sb, client)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/helpers.py", line 288, in make_state_url
state = sb.render_state(df, return_as="dict")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/statebuilder.py", line 269, in render_state
return last_builder.render_state(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/statebuilder.py", line 158, in render_state
self.handle_positions(data)
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/statebuilder.py", line 112, in handle_positions
pos = l._set_view_options(self._temp_viewer, data, viewer_resolution=self._resolution)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/layers.py", line 461, in _set_view_options
pos = rule._get_position(
^^^^^^^^^^^^^^^^^^^
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/mappers.py", line 398, in _get_position
data = self._preprocess_data(data, skip_columns=self.data_columns[1:], first=True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/mappers.py", line 345, in _preprocess_data
data = self._process_columns(data, skip_columns=skip_columns)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/nglui/statebuilder/mappers.py", line 330, in _process_columns
data[col] = np.vstack(data[split_cols].values).tolist()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/ben.pedigo/code/skedits/skedits-app/skedits/.venv/lib/python3.11/site-packages/numpy/core/shape_base.py", line 289, in vstack
return _nx.concatenate(arrs, 0, dtype=dtype, casting=casting)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: need at least one array to concatenate
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