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Copy file name to clipboardExpand all lines: _uw-research-computing/conda-installation.md
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### Option A - Container (recommended)
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Build a container with Conda packages installed inside:
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Build a container with Conda packages installed inside. Start by reviewing
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the container build instructions for either Apptainer or Docker. Then, when
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following the build instructions, use the example recipes for either a
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`.def` or `Dockerfile`, respectively.
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1. How to build your own container: [Apptainer](apptainer-htc#use-an-apptainer-container-in-htc-jobs) / [Docker](docker-build)
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2.[Example container recipes for Conda](https://github.com/CHTC/recipes/tree/main/software/Conda)
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2.Tips and tricks, container recipes: [Example container recipes for Conda](https://github.com/CHTC/recipes/tree/main/software/Conda)
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3. Use your container in your HTC jobs: [Apptainer](software-overview-htc.html#use-an-existing-container) / [Docker](docker-jobs.html#use-a-docker-container-in-a-job)
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<!-- replace this eventually with conda walkthrough -->
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### Option B - "Packed" Conda Env
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Create your own portable copy of your Conda packages:
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1. Follow the instructions in [our guide](conda-installation.html#option-b-packed-conda-env)
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> This approach may be sensitive to the operating system of the execution point.
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> We recommend building a container instead, but are keeping these instructions as a backup.
Copy file name to clipboardExpand all lines: _uw-research-computing/julia-jobs.md
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### Option A - Container (recommended)
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Build (or find) a container with Julia & packages installed inside:
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Build (or find) a container with Julia & packages installed inside.
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Start by reviewing
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the container build instructions for either Apptainer or Docker. Then, when
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following the build instructions, use the example recipes for either a
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`.def` or `Dockerfile`, respectively.
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1. How to build your own container: [Apptainer](apptainer-htc#use-an-apptainer-container-in-htc-jobs) / [Docker](docker-build)
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2.[Example container recipes for Julia](https://github.com/CHTC/recipes/tree/main/software/Julia)
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2.Tips and tricks, container recipes: [Example container recipes for Julia](https://github.com/CHTC/recipes/tree/main/software/Julia)
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3. Use your container in your HTC jobs: [Apptainer](software-overview-htc.html#use-an-existing-container) / [Docker](docker-jobs.html#use-a-docker-container-in-a-job)
Copy file name to clipboardExpand all lines: _uw-research-computing/matlab-jobs.md
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## Quickstart: Matlab
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Build a container with Matlab & toolboxes installed inside:
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Build a container with Matlab & toolboxes installed inside.
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Start by reviewing
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the container build instructions for either Apptainer or Docker. Then, when
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following the build instructions, use the example recipes for either a
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`.def` or `Dockerfile`, respectively.
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### Useful links
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1. How to build your own container: [Apptainer](apptainer-htc#use-an-apptainer-container-in-htc-jobs)
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2.[Example container recipes for Matlab](https://github.com/CHTC/recipes/tree/main/software/Matlab)
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3. Use your container in your HTC jobs: [Apptainer](software-overview-htc.html#use-an-existing-container)
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2. Tips and tricks, container recipes: [Example container recipes for Matlab](https://github.com/CHTC/recipes/tree/main/software/Matlab)
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3. Use your container in your HTC jobs: [Apptainer](software-overview-htc.html#use-an-existing-container) / [Docker](docker-jobs.html#use-a-docker-container-in-a-job)
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### Needed submit file option
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> **Note**: Because Matlab is a licensed software, you **must** add the following line to your submit file:
Copy file name to clipboardExpand all lines: _uw-research-computing/python-jobs.md
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### Option A - Own Container (recommended)
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Build a container with Python & packages installed inside:
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Build a container with Python & packages installed inside. Start by reviewing
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the container build instructions for either Apptainer or Docker. Then, when
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following the build instructions, use the example recipes for either a
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`.def` or `Dockerfile`, respectively.
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1. How to build your own container: [Apptainer](apptainer-htc#use-an-apptainer-container-in-htc-jobs) / [Docker](docker-build)
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2.[Example container recipes for Python](https://github.com/CHTC/recipes/tree/main/software/Python/)
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2.Tips and tricks, container recipes: [Example container recipes for Python](https://github.com/CHTC/recipes/tree/main/software/Python/)
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3. Use your container in your HTC jobs: [Apptainer](software-overview-htc.html#use-an-existing-container) / [Docker](docker-jobs.html#use-a-docker-container-in-a-job)
Copy file name to clipboardExpand all lines: _uw-research-computing/r-jobs.md
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## Quickstart: R
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#### Option A - Your Container (recommended)
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### Option A - Your Container (recommended)
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Build a container with R & packages installed inside. Start by reviewing
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the container build instructions for either Apptainer or Docker. Then, when
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following the build instructions, use the example recipes for either a
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`.def` or `Dockerfile`, respectively.
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Build a container with R & packages installed inside:
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1. How to build your own container: [Apptainer](apptainer-htc#use-an-apptainer-container-in-htc-jobs) / [Docker](docker-build)
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2.[Example container recipes for R](https://github.com/CHTC/recipes/tree/main/software/R/)
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2.Tips and tricks, container recipes: [Example container recipes for R](https://github.com/CHTC/recipes/tree/main/software/R/)
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3. Use your container in your HTC jobs: [Apptainer](software-overview-htc.html#use-an-existing-container) / [Docker](docker-jobs.html#use-a-docker-container-in-a-job)
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####Option B - Existing Container
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### Option B - Existing Container
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Use an existing container with a base installation of R:
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