code update to Maven file structure

[mgeorgiades]

hi Mechalikh,

thank you for your code. I used to have a running code in the past with a previous version!

I tried to use the latest version of the PureEdgeSim code and update the structure to one preferred by Maven and used the latest Java in Ubuntu 23.04.
(base) mike@mike-HP-ProBook-430-G5:~/.m2$ java --version
openjdk 18.0.2-ea 2022-07-19
OpenJDK Runtime Environment (build 18.0.2-ea+9-Ubuntu-2ubuntu1)
OpenJDK 64-Bit Server VM (build 18.0.2-ea+9-Ubuntu-2ubuntu1, mixed mode, sharing)

but I get issues.

Is it possible to update the structure to one preferred by Maven compilation and test with latest Java version in Ubuntu/Linux?

my-project/
├── src/
│ ├── main/
│ │ ├── java/ <-- Your Java source code goes here
│ │ │ └── com/
│ │ │ └── mechalikh/
│ │ │ └── pureedgesim/
│ │ │ └── MainApplication.java
│ │ └── resources/ <-- Resources (like properties files) go here
│ │ └── application.properties
│ └── test/
│ ├── java/ <-- Test source code goes here
│ │ └── com/
│ │ └── mechalikh/
│ │ └── pureedgesim/
│ │ └── MainApplicationTest.java
│ └── resources/ <-- Test resources go here
│ └── test-data.json
└── pom.xml <-- Project configuration file

Kind regards,
Mihalis

[mgeorgiades]

OK. I fixed it with the latest Java, Maven and Ubuntu. I have duplicate folders but at least it works.

Description: Ubuntu 23.04
openjdk 18.0.2-ea 2022-07-19
OpenJDK Runtime Environment (build 18.0.2-ea+9-Ubuntu-2ubuntu1)
OpenJDK 64-Bit Server VM (build 18.0.2-ea+9-Ubuntu-2ubuntu1, mixed mode, sharing)
Apache Maven 3.8.7

[mgeorgiades]

I cleaned it. I am not an expert programmer, but I moved only the necessary folders as desired by Maven and got the below new tree structure.

├── bin
│   ├── CHANGELOG.md
│   ├── CNAME
│   ├── _config.yml
│   ├── jacoco.xml
│   ├── LICENSE
│   ├── pom.xml
│   ├── PureEdgeSim
│   ├── README.md
│   └── target
├── CHANGELOG.md
├── CNAME
├── _config.yml
├── jacoco.xml
├── LICENSE
├── pom.xml
├── PureEdgeSim
│   ├── output
│   └── settings
├── PureEdgeSim.tar.gz
├── README.md
├── src
│   └── main
└── target
├── classes
├── maven-archiver
├── maven-status
├── pureedgesim-5.2.0.jar
└── pureedgesim-5.2.0-sources.jar

[mgeorgiades]

and changed pom.xml to the below. of course /home/mike should be replaced with your name or folders.

4.0.0 com.mechalikh pureedgesim 5.2.0 PureEdgeSim https://github.com/CharafeddineMechalikh/PureEdgeSim A simualtor for edge computing environments

<organization>
	<name>LIPAH laboratory, Faculty of Science of Tunis</name>
	<url>http://www.fst.rnu.tn</url>
</organization>

<licenses>
	<license>
		<name>GPLv3</name>
		<url>http://www.gnu.org/licenses/gpl-3.0.txt</url>
	</license>
</licenses>

<developers>
	<developer>
		<name>Charafeddine Mechalikh</name>
		<email>charafeddine.mechalikh@gmail.com</email>
		<organization>LIPAH laboratory, Faculty of Science of Tunis</organization>
		<organizationUrl>http://www.fst.rnu.tn</organizationUrl>
	</developer>
</developers>

<scm>
	<connection>scm:git:git@github.com:CharafeddineMechalikh/PureEdgeSim.git</connection>
	<developerConnection>scm:git:git@github.com:CharafeddineMechalikh/PureEdgeSim.git</developerConnection>
	<url>https://github.com/CharafeddineMechalikh/PureEdgeSim</url>
</scm>

<issueManagement>
	<url>https://github.com/CharafeddineMechalikh/PureEdgeSim/issues</url>
	<system>GitHub Issues</system>
</issueManagement>

<properties>
	<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
	<license.dir>/home/mike/Simulations/PureEdgeSim-master/LICENSE</license.dir>
	<license-maven-plugin.version>3.0</license-maven-plugin.version>
	<!-- License file to be used by the com.mycila.license-maven-plugin -->
	<copyrightfile>COPYRIGHT</copyrightfile>
	<maven.compiler.target>1.8</maven.compiler.target>
	<maven.compiler.source>1.8</maven.compiler.source>
	<maven.compiler.release>11</maven.compiler.release>
</properties>

<repositories>
    <repository>
        <id>com.springsource.repository.bundles.release</id>
        <name>SpringSource Enterprise Bundle Repository - SpringSource Bundle Releases</name>
        <url>http://repository.springsource.com/maven/bundles/release</url>
    </repository>
    <repository>
        <id>com.springsource.repository.bundles.external</id>
        <name>SpringSource Enterprise Bundle Repository - External Bundle Releases</name>
        <url>http://repository.springsource.com/maven/bundles/external</url>
    </repository>
</repositories>

<profiles>
	<!-- The profiles 'default' and 'integration-tests' are specified to allow 
		using the maven-surefire-plugin instead of the maven-failsafe-plugin to run 
		Integration/Functional tests. By this way, it is possible to see the Integration/Functional 
		tests results directly at the NetBeans JUnit graphical test results interface. -->
	<profile>
		<!-- This is the default profile that runs just the Unit Tests, ignoring 
			the Integration/Functional tests. -->
		<id>default</id>
		<activation>
			<activeByDefault>true</activeByDefault>
		</activation>
		<build>
			<plugins>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-surefire-plugin</artifactId>
					<configuration>
						<excludes>
							<exclude>**/integrationtests/*.java</exclude>
						</excludes>
					</configuration>
				</plugin>

				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-source-plugin</artifactId>
					<version>3.2.1</version>
					<executions>
						<execution>
							<id>attach-sources</id>
							<goals>
								<goal>jar-no-fork</goal>
							</goals>
						</execution>
					</executions>
				</plugin>

				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-javadoc-plugin</artifactId>
					<version>3.2.0</version>
					<configuration>
						<source>8</source>
					</configuration>
				</plugin>
			</plugins>
		</build>
	</profile>

	<profile>
		<!-- This is the profile that runs all the Unit and Integration/Functional 
			Tests. -->
		<id>integration-tests</id>
		<build>
			<plugins>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-surefire-plugin</artifactId>
				</plugin>
			</plugins>
		</build>
	</profile>

	<profile>
		<!-- A profile used to execute all goals required to deploy the project 
			to the Maven Central. To execute use: mvn clean deploy -P sonatype To check 
			the deployed artifact and probably release it to maven central you should 
			visit https://oss.sonatype.org. MAKE SURE YOU ARE LOGGED IN TO SEE YOUR DEPLOYMENTS. -->
		<id>sonatype</id>

		<!-- URLs to deploy the project at the Maven Central (http://mvnrepository.com) 
			using a Sonatype account (http://central.sonatype.org) See the "all" profile 
			in this pom for deployment information. -->
		<!-- repository for uploading -->
		<distributionManagement>
			<snapshotRepository>
				<id>ossrh</id>
				<url>https://s01.oss.sonatype.org/content/repositories/snapshots</url>
			</snapshotRepository>
			<repository>
				<id>ossrh</id>
				<url>https://s01.oss.sonatype.org/service/local/staging/deploy/maven2/</url>
			</repository>
		</distributionManagement>

		<build>
			<plugins>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-surefire-plugin</artifactId>
				</plugin>

				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-source-plugin</artifactId>
					<version>3.2.1</version>
					<executions>
						<execution>
							<id>attach-sources</id>
							<phase>verify</phase>
							<goals>
								<goal>jar-no-fork</goal>
							</goals>
						</execution>
					</executions>
				</plugin>

				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-javadoc-plugin</artifactId>
					<configuration>
						<excludePackageNames>examples</excludePackageNames>
					</configuration>
					<executions>
						<execution>
							<id>attach-javadocs</id>
							<goals>
								<goal>jar</goal>
							</goals>
							<configuration>
    							<release>11</release>
  							</configuration>
						</execution>
					</executions>
				</plugin>

				<!-- Signs the generated jar using GPG, as required for deploying at 
					the Maven Central. Configurations are defined into the local repo settings.xml -->
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-gpg-plugin</artifactId>
					<version>1.6</version>
					<executions>
						<execution>
							<id>sign-artifacts</id>
							<phase>verify</phase>
							<goals>
								<goal>sign</goal>
							</goals>
							<configuration>
								<keyname>08CC1595464BBEC0</keyname>
								<passphraseServerId>mihalis</passphraseServerId>
							</configuration>
						</execution>
					</executions>
				</plugin>
			</plugins>
		</build>
	</profile>
</profiles>

<build>
	<pluginManagement>
		<!-- Plugins to be reused for different <profile>'s -->
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-surefire-plugin</artifactId>
				<!-- There is some problem with the version 2.19.1 or with Netbeans 
					8.0.2 that the JUnit GUI is not shown at the IDE -->
				<version>3.0.0-M5</version>
				<configuration>
					<forkCount>1</forkCount>
					<reuseForks>false</reuseForks>
					<testFailureIgnore>true</testFailureIgnore>
				</configuration>
			</plugin>

			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-javadoc-plugin</artifactId>
				<version>3.1.0</version>
				<configuration>
					<failOnError>false</failOnError>
					<tags>
						<tag>
							<name>TODO</name>
							<!-- TODO tag for all places -->
							<placement>a</placement>
							<head>To do something:</head>
						</tag>
					</tags>
				</configuration>
			</plugin>
		</plugins>
	</pluginManagement>

	<plugins>
		<plugin>
			<groupId>org.apache.maven.plugins</groupId>
			<artifactId>maven-jar-plugin</artifactId>
			<version>3.2.0</version>
			<configuration>
				<archive>
					<manifest>
						<!-- Adds dependencies to classpath into the manifest file inside 
							the jar ! -->
						<addClasspath>true</addClasspath>

						<!-- Defines that the dependencies will follow the same hierarchical 
							directory structure of a maven repository ! -->
						<classpathLayoutType>repository</classpathLayoutType>

						<!-- Defines the root folder where the dependencies are. In this case 
							is the the root of the local maven repository. ! -->
						<classpathPrefix>/home/mike/.m2/repository/</classpathPrefix>
					</manifest>
				</archive>
			</configuration>
		</plugin>

		<plugin>
			<groupId>org.apache.maven.plugins</groupId>
			<artifactId>maven-compiler-plugin</artifactId>
			<version>3.8.1</version>
			<configuration>
				<generatedSourcesDirectory>src/main/java</generatedSourcesDirectory>
				<excludes>
					<exclude>**/examples/Example8.java</exclude>
					<exclude>**/examples/Example8FuzzyLogicOrchestrator.java</exclude>
					<exclude>**/examples/Example1.java</exclude>
					<exclude>**/examples/Example5.java</exclude>
				</excludes>
				<release>11</release>
			</configuration>
		</plugin>

		<!-- Plugin for code coverage, enabling generation of reports on IDE to 
			see percentage of the project's code that is being covered by unit tests. -->
		<plugin>
			<groupId>org.jacoco</groupId>
			<artifactId>jacoco-maven-plugin</artifactId>
			<version>0.8.7</version>
			<configuration>
				<excludes>
					<exclude>**/libs/</exclude>
					<exclude>**/examples/</exclude>
				</excludes>
			</configuration>
			<executions>
				<execution>
					<id>prepare-agent</id>
					<goals>
						<goal>prepare-agent</goal>
					</goals>
				</execution>
				<execution>
					<id>report</id>
					<phase>test</phase>
					<goals>
						<goal>report</goal>
					</goals>
				</execution>
			</executions>
		</plugin>
	</plugins>
</build>

<reporting>
	<plugins>
		<plugin>
			<groupId>org.apache.maven.plugins</groupId>
			<artifactId>maven-javadoc-plugin</artifactId>
			<version>3.1.0</version>
			<reportSets>
				<!-- https://maven.apache.org/plugins/maven-javadoc-plugin/examples/javadoc-nofork.html -->
				<reportSet>
					<reports>
						<report>javadoc-no-fork</report>
						<report>test-javadoc-no-fork</report>
					</reports>
				</reportSet>
			</reportSets>

			<configuration>
				<tags>
					<tag>
						<name>TODO</name>
						<!-- TODO tag for all places -->
						<placement>a</placement>
						<head>To do something:</head>
					</tag>
				</tags>
			</configuration>
		</plugin>
	</plugins>
</reporting>


<dependencies>
	<dependency>
		<groupId>org.jgrapht</groupId>
		<artifactId>jgrapht-core</artifactId>
		<version>1.3.1</version>
	</dependency>
	<dependency>
		<groupId>org.knowm.xchart</groupId>
		<artifactId>xchart</artifactId>
		<version>3.8.0</version>
	</dependency>
	<dependency>
		<groupId>org.junit.jupiter</groupId>
		<artifactId>junit-jupiter-engine</artifactId>
		<version>5.8.2</version>
		<scope>test</scope>
	</dependency>
	<dependency>
		<groupId>de.biomedical-imaging.edu.wlu.cs.levy.cg</groupId>
		<artifactId>kdtree</artifactId>
		<version>1.0.3</version>
	</dependency>
	<dependency>
		<groupId>org.mockito</groupId>
		<artifactId>mockito-core</artifactId>
		<version>4.0.0</version>
		<scope>test</scope>
	</dependency>
	<!--
	<dependency>
		<groupId>net.sourceforge.jFuzzyLogic</groupId>
		<artifactId>jFuzzyLogic</artifactId>
		<version>3.0</version>
		<scope>system</scope>
		<systemPath>${project.basedir}/PureEdgeSim/libs/jFuzzyLogic_v3.0.jar</systemPath>
	</dependency>
	-->
</dependencies>