Softwares/providers installation issue

[YanchunHe]

When installing the providers/softwares with ref providers create-env, some errors are reported:

...
Linking gdk-pixbuf-2.42.12-hb9ae30d_0
g_module_open() failed for /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/lib/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-gif.so: libjpeg.so.8: cannot open shared object file: No such file or directory
g_module_open() failed for /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/lib/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-tiff.so: libtiff.so.6: cannot open shared object file: No such file or directory

Linking geographiclib-2.0-pyhd8ed1ab_1

...
Linking graphviz-12.2.1-h5ae0cbf_1
g_module_open() failed for /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/lib/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-gif.so: libjpeg.so.8: cannot open shared object file: No such file or directory
g_module_open() failed for /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/lib/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-tiff.so: libtiff.so.6: cannot open shared object file: No such file or directory

Linking gtk3-3.24.43-h021d004_3
g_module_open() failed for /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/lib/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-gif.so: libjpeg.so.8: cannot open shared object file: No such file or directory
g_module_open() failed for /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/lib/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-tiff.so: libtiff.so.6: cannot open shared object file: No such file or directory
/nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/bin/glib-compile-schemas: symbol lookup error: /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/bin/glib-compile-schemas: undefined symbol: g_string_free_and_steal
ERROR: Failed to complete gtk3's post-link script.
To fix this, activate the environment and run:
    glib-compile-schemas "/nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/share/glib-2.0/schemas"
    gtk-update-icon-cache -f -t "/nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/share/icons/hicolor"
    gtk-query-immodules-3.0 --update-cache

Linking gts-0.7.6-h977cf35_4
...

Linking librsvg-2.58.4-h49af25d_2
g_module_open() failed for /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/lib/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-gif.so: libjpeg.so.8: cannot open shared object file: No such file or directory
g_module_open() failed for /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/lib/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-tiff.so: libtiff.so.6: cannot open shared object file: No such file or directory
/nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/bin/glib-compile-schemas: symbol lookup error: /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/bin/glib-compile-schemas: undefined symbol: g_string_free_and_steal
ERROR: Failed to complete gtk3's post-link script.
To fix this, activate the environment and run:
    glib-compile-schemas "/nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/share/glib-2.0/schemas"
    gtk-update-icon-cache -f -t "/nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/share/icons/hicolor"
    gtk-query-immodules-3.0 --update-cache
g_module_open() failed for /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d/lib/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-tiff.so: libtiff.so.6: cannot open shared object file: No such file or directory

Linking librttopo-1.1.0-hc670b87_16

...

Linking nb_conda-2.2.1-pyh707e725_7
/nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381/bin/.nb_conda-post-link.sh: line 2: /nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381/bin/jupyter-nbextension: No such file or directory
/nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381/bin/.nb_conda-post-link.sh: line 3: /nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381/bin/jupyter-serverextension: No such file or directory

Linking nb_conda_kernels-2.5.1-pyh707e725_2
/nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381/bin/.nb_conda-post-link.sh: line 2: /nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381/bin/jupyter-nbextension: No such file or directory
/nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381/bin/.nb_conda-post-link.sh: line 3: /nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381/bin/jupyter-serverextension: No such file or directory
/nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381/bin/.nb_conda_kernels-post-link.sh: line 1: /nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381/bin/python: No such file or directory

Linking nbclassic-1.3.1-pyhe01879c_0

It ends up installed the esmvaltool and pmp, but not sure if these errors hurt and have to be fixed:

  provider     version   conda environment
 ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
  esmvaltool   0.6.1     /nird/datalake/NS16000B/climate-ref-software/conda/esmvaltool-9776cff81b525ef5fc839c1b70ccfa40943cee1d
  ilamb        0.6.1
  pmp          0.6.1     /nird/datalake/NS16000B/climate-ref-software/conda/pmp-09fc79daa7e05ca0dfac8feba9246e4bb5045381

[lamaliang]

I have the same problem and not found climate_ref_core.executor as following :

ERROR | climate_ref_core.executor - Package 'cmip_ref.executor.local.LocalExecutor' not found

[lamaliang]

Hello @YanchunHe
I’ve already fixed the issue.
After activating climate-ref, make sure to run the following command to install the necessary software environment:
ref providers create-env