-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy path3dCurvatureViewerNoise_8cpp_source.html
767 lines (765 loc) · 126 KB
/
3dCurvatureViewerNoise_8cpp_source.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
<!-- HTML header for doxygen 1.8.11-->
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.9.1"/>
<title>DGtalTools: 3dCurvatureViewerNoise.cpp Source File</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<script type="text/x-mathjax-config">
MathJax.Hub.Config({
extensions: ["tex2jax.js", "TeX/AMSmath.js", "TeX/AMSsymbols.js"],
jax: ["input/TeX","output/HTML-CSS"],
});
</script>
<script type="text/javascript" async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.3/MathJax.js?config=TeX-MML-AM_CHTML/MathJax.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
<link href="modern-doxygen-green.css" rel="stylesheet" type="text/css"/>
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
<tbody>
<tr style="height: 56px;">
<td id="projectalign" style="padding-left: 0.5em;">
<div id="projectname">DGtalTools
 <span id="projectnumber">1.5.beta</span>
</div>
</td>
</tr>
</tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.9.1 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search','.html');
/* @license-end */
</script>
<script type="text/javascript" src="menudata.js"></script>
<script type="text/javascript" src="menu.js"></script>
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
$(function() {
initMenu('',true,false,'search.php','Search');
$(document).ready(function() { init_search(); });
});
/* @license-end */</script>
<div id="main-nav"></div>
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>
<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0"
name="MSearchResults" id="MSearchResults">
</iframe>
</div>
<div id="nav-path" class="navpath">
<ul>
<li class="navelem"><a class="el" href="dir_74fcefaf575a6d4264bd59dd648a438b.html">visualisation</a></li> </ul>
</div>
</div><!-- top -->
<div class="header">
<div class="headertitle">
<div class="title">3dCurvatureViewerNoise.cpp</div> </div>
</div><!--header-->
<div class="contents">
<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span>  </div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="preprocessor">#include <iostream></span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="preprocessor">#include "DGtal/base/Common.h"</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="preprocessor">#include <cstring></span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  </div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="preprocessor">#include "CLI11.hpp"</span></div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  </div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  </div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="comment">// Shape constructors</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include "DGtal/io/readers/GenericReader.h"</span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include "DGtal/images/ImageSelector.h"</span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include "DGtal/images/imagesSetsUtils/SetFromImage.h"</span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include "DGtal/images/IntervalForegroundPredicate.h"</span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include "DGtal/topology/SurfelAdjacency.h"</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include "DGtal/topology/helpers/Surfaces.h"</span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include "DGtal/topology/LightImplicitDigitalSurface.h"</span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor">#include <DGtal/topology/SetOfSurfels.h></span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  </div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor">#include "DGtal/images/ImageHelper.h"</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#include "DGtal/topology/DigitalSurface.h"</span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="preprocessor">#include "DGtal/graph/DepthFirstVisitor.h"</span></div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="preprocessor">#include "DGtal/graph/GraphVisitorRange.h"</span></div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  </div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="comment">// Noise</span></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> <span class="preprocessor">#include "DGtal/geometry/volumes/KanungoNoise.h"</span></div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  </div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> <span class="comment">// Integral Invariant includes</span></div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> <span class="preprocessor">#include "DGtal/geometry/surfaces/estimation/IIGeometricFunctors.h"</span></div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> <span class="preprocessor">#include "DGtal/geometry/surfaces/estimation/IntegralInvariantVolumeEstimator.h"</span></div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> <span class="preprocessor">#include "DGtal/geometry/surfaces/estimation/IntegralInvariantCovarianceEstimator.h"</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  </div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> <span class="comment">// Drawing</span></div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> <span class="preprocessor">#include "DGtal/io/boards/Board3D.h"</span></div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> <span class="preprocessor">#include "DGtal/io/colormaps/GradientColorMap.h"</span></div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  </div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> <span class="preprocessor">#include "DGtal/io/viewers/Viewer3D.h"</span></div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  </div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> <span class="keyword">using namespace </span><a class="code" href="namespaceDGtal.html">DGtal</a>;</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> <span class="keyword">using namespace </span>functors;</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  </div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span> <span class="keyword">const</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a> AXIS_COLOR_RED( 200, 20, 20, 255 );</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span> <span class="keyword">const</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a> AXIS_COLOR_GREEN( 20, 200, 20, 255 );</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span> <span class="keyword">const</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a> AXIS_COLOR_BLUE( 20, 20, 200, 255 );</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span> <span class="keyword">const</span> <span class="keywordtype">double</span> AXIS_LINESIZE = 0.05;</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  </div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  </div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span> <span class="keywordtype">void</span> missingParam( std::string param )</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span> {</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a1e786a1f3b1047e92b73c82f67e3c295">error</a>() << <span class="stringliteral">" Parameter: "</span> << param << <span class="stringliteral">" is required."</span>;</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#ad054990834d2763627166540087a2980">info</a>() << std::endl;</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span> }</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  </div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  </div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span> <span class="keywordtype">int</span> <a class="code" href="3dHeightMapViewer_8cpp.html#a3c04138a5bfe5d72780bb7e82a18e627">main</a>( <span class="keywordtype">int</span> argc, <span class="keywordtype">char</span>** argv )</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span> {</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  <span class="comment">// parse command line using CLI ----------------------------------------------</span></div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  CLI::App app;</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  std::string inputFileName;</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  <span class="keywordtype">double</span> re_convolution_kernel;</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <span class="keywordtype">double</span> noiseLevel {0.5};</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> threshold {8};</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="keywordtype">int</span> minImageThreshold {0};</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  <span class="keywordtype">int</span> maxImageThreshold {255};</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  std::string mode {<span class="stringliteral">"mean"</span>};</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  std::string export_obj_filename;</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  std::string export_dat_filename;</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="keywordtype">bool</span> exportOnly {<span class="keyword">false</span>};</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  std::vector< double> vectScale;</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  <span class="keywordtype">bool</span> normalization {<span class="keyword">false</span>};</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  </div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  </div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  app.description(<span class="stringliteral">"Visualisation of 3d curvature from .vol file using curvature from Integral Invariant\nBasic usage:\n \t3dCurvatureViewerNoise file.vol --radius 5 --mode mean --noise 0.5 \n Below are the different available modes: \n\t - \"mean\" for the mean curvature \n \t - \"mean\" for the mean curvature\n\t - \"gaussian\" for the Gaussian curvature\n\t - \"k1\" for the first principal curvature\n\t - \"k2\" for the second principal curvature\n\t - \"prindir1\" for the first principal curvature direction\n\t - \"prindir2\" for the second principal curvature direction\n\t - \"normal\" for the normal vector"</span>);</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  </div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  </div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  </div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  app.add_option(<span class="stringliteral">"-i,--input,1"</span>, inputFileName, <span class="stringliteral">"vol file (.vol, .longvol .p3d, .pgm3d and if WITH_ITK is selected: dicom, dcm, mha, mhd). For longvol, dicom, dcm, mha or mhd formats, the input values are linearly scaled between 0 and 255."</span> )</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  ->required()</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  ->check(CLI::ExistingFile);</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  </div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  app.add_option(<span class="stringliteral">"--radius,-r"</span>, re_convolution_kernel, <span class="stringliteral">"Kernel radius for IntegralInvariant"</span> )</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  ->required();</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  app.add_option(<span class="stringliteral">"--noise,-k"</span>, noiseLevel, <span class="stringliteral">"Level of Kanungo noise ]0;1["</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  app.add_option(<span class="stringliteral">"--threshold,-t"</span>, threshold, <span class="stringliteral">"Min size of SCell boundary of an object"</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  app.add_option(<span class="stringliteral">"--minImageThreshold,-l"</span>,minImageThreshold, <span class="stringliteral">"set the minimal image threshold to define the image object (object defined by the voxel with intensity belonging to ]minImageThreshold, maxImageThreshold ] )."</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  app.add_option(<span class="stringliteral">"--maxImageThreshold,-u"</span>,maxImageThreshold, <span class="stringliteral">"set the maximal image threshold to define the image object (object defined by the voxel with intensity belonging to ]minImageThreshold, maxImageThreshold] )."</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  app.add_option(<span class="stringliteral">"--mode,-m"</span>, mode, <span class="stringliteral">"type of output : mean, gaussian, k1, k2, prindir1, prindir2 or normal(default mean)"</span>, <span class="keyword">true</span>)</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  -> check(CLI::IsMember({<span class="stringliteral">"mean"</span>,<span class="stringliteral">"gaussian"</span>, <span class="stringliteral">"k1"</span>, <span class="stringliteral">"k2"</span>, <span class="stringliteral">"prindir1"</span>,<span class="stringliteral">"prindir2"</span>, <span class="stringliteral">"normal"</span> }));</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  app.add_option(<span class="stringliteral">"--exportOBJ,-o"</span>, export_obj_filename, <span class="stringliteral">"Export the scene to specified OBJ/MTL filename (extensions added)."</span>);</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  app.add_option(<span class="stringliteral">"--exportDAT,-d"</span>,export_dat_filename, <span class="stringliteral">"Export resulting curvature (for mean, gaussian, k1 or k2 mode) in a simple data file each line representing a surfel."</span> );</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  app.add_flag(<span class="stringliteral">"--exportOnly"</span>, exportOnly, <span class="stringliteral">"Used to only export the result without the 3d Visualisation (usefull for scripts)."</span>);</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  </div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  app.add_option(<span class="stringliteral">"--imageScale,-s"</span>, vectScale, <span class="stringliteral">"scaleX, scaleY, scaleZ: re sample the source image according with a grid of size 1.0/scale (usefull to compute curvature on image defined on anisotropic grid). Set by default to 1.0 for the three axis."</span>)</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  ->expected(3);</div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  </div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  app.add_option(<span class="stringliteral">"--normalization,-n"</span>,normalization, <span class="stringliteral">"When exporting to OBJ, performs a normalization so that the geometry fits in [-1/2,1/2]^3"</span>) ;</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  </div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  app.get_formatter()->column_width(40);</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  CLI11_PARSE(app, argc, argv);</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <span class="comment">// END parse command line using CLI ----------------------------------------------</span></div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  </div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  <span class="keywordtype">bool</span> neededArgsGiven=<span class="keyword">true</span>;</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  </div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  <span class="keywordflow">if</span>( noiseLevel < 0.0 || noiseLevel > 1.0 )</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  {</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a1e786a1f3b1047e92b73c82f67e3c295">error</a>() << <span class="stringliteral">"The noise level should be in the interval: ]0, 1["</span><< std::endl;</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  exit(EXIT_FAILURE);</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  }</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  </div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span> <span class="preprocessor">#ifndef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <span class="keywordtype">bool</span> enable_visu = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span> <span class="preprocessor">#else</span></div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  <span class="keywordtype">bool</span> enable_visu = !exportOnly; </div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="keywordtype">bool</span> enable_obj = export_obj_filename != <span class="stringliteral">""</span>; </div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="keywordtype">bool</span> enable_dat = export_dat_filename != <span class="stringliteral">""</span>; </div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  </div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  <span class="keywordflow">if</span>( !enable_visu && !enable_obj && !enable_dat )</div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  {</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span> <span class="preprocessor">#ifndef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a1e786a1f3b1047e92b73c82f67e3c295">error</a>() << <span class="stringliteral">"You should specify what you want to export with --export and/or --exportDat."</span> << std::endl;</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span> <span class="preprocessor">#else</span></div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a1e786a1f3b1047e92b73c82f67e3c295">error</a>() << <span class="stringliteral">"You should specify what you want to export with --export and/or --exportDat, or remove --exportOnly."</span> << std::endl;</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  neededArgsGiven = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  }</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  </div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  <span class="keywordtype">double</span> h = 1.0;</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  </div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  <span class="keywordflow">if</span>( enable_obj )</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  {</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  <span class="keywordflow">if</span>( export_obj_filename.find(<span class="stringliteral">".obj"</span>) == std::string::npos )</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  {</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  std::ostringstream oss;</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  oss << export_obj_filename << <span class="stringliteral">".obj"</span> << std::endl;</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  export_obj_filename = oss.str();</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  }</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  }</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  </div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  std::vector< double > aGridSizeReSample;</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  <span class="keywordflow">if</span>( vectScale.size() == 3)</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  {</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  aGridSizeReSample.push_back(1.0/vectScale.at(0));</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  aGridSizeReSample.push_back(1.0/vectScale.at(1));</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  aGridSizeReSample.push_back(1.0/vectScale.at(2));</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  </div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  }</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  {</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  aGridSizeReSample.push_back(1.0);</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  aGridSizeReSample.push_back(1.0);</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  aGridSizeReSample.push_back(1.0);</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  }</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  </div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  </div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  </div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <span class="comment">// Construction of the shape from vol file</span></div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">Z3i::Space::RealPoint</a> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">RealPoint</a>;</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">Z3i::Point</a> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IteratorCompletionTraits_3_01ArrayImageAdapter_3_01TArrayIterator_00_01TDomain_01_4_01_4_1_1DistanceFunctor.html#af185de5027177db2d1b4a0b775be8c3f">Point</a>;</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1ImageContainerBySTLVector.html">ImageSelector< Z3i::Domain, int>::Type</a> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Image.html">Image</a>;</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1BasicDomainSubSampler.html">DGtal::functors::BasicDomainSubSampler< HyperRectDomain<SpaceND<3, int></a> >,</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#ac1e9ac6a329319ae13c51c0c9e92486a">DGtal::int32_t</a>, <span class="keywordtype">double</span> > ReSampler;</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1ConstImageAdapter.html">DGtal::ConstImageAdapter</a><<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Image.html">Image</a>, <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Image.html#ace481f886b37a80824817b5f1494df58">Image::Domain</a>, ReSampler,</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Image.html#ad56b43a36c897e64398934c8f7a3b01c">Image::Value</a>, <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1Identity.html">DGtal::functors::Identity</a> > SamplerImageAdapter;</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1IntervalForegroundPredicate.html">IntervalForegroundPredicate< SamplerImageAdapter ></a> ImagePredicate;</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KanungoNoise.html">KanungoNoise< ImagePredicate, Z3i::Domain ></a> KanungoPredicate;</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1BinaryPointPredicate.html">BinaryPointPredicate<DomainPredicate<Image::Domain></a>, KanungoPredicate, <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1AndBoolFct2.html">AndBoolFct2</a> > Predicate;</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html">Z3i::KSpace</a> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html">KSpace</a>;</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SignedKhalimskyCell.html">KSpace::SCell</a> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SignedKhalimskyCell.html">SCell</a>;</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1KhalimskyCell.html">KSpace::Cell</a> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1KhalimskyCell.html">Cell</a>;</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  </div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a352b7160bf722e2f0bcbee5d0bad6ef3">beginBlock</a>(<span class="stringliteral">"Loading the file"</span>);</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  </div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Image.html">Image</a> image = <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1GenericReader.html#a7e2fbfbe0d3c94e6bc4ca67e96c01f7c">GenericReader<Image>::import</a>( inputFileName );</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  </div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">PointVector<3,int></a> shiftVector3D( 0 ,0, 0 );</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1BasicDomainSubSampler.html">DGtal::functors::BasicDomainSubSampler< HyperRectDomain< SpaceND< 3, int ></a> >,</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#ac1e9ac6a329319ae13c51c0c9e92486a">DGtal::int32_t</a>, <span class="keywordtype">double</span> > reSampler(image.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Image.html#a28a1c55de323d0d0ec62d2db03eaf180">domain</a>(),</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  aGridSizeReSample, shiftVector3D);</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  <span class="keyword">const</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1Identity.html">functors::Identity</a> identityFunctor{};</div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  SamplerImageAdapter sampledImage ( image, reSampler.getSubSampledDomain(), reSampler, identityFunctor );</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  ImagePredicate predicateIMG = ImagePredicate( sampledImage, minImageThreshold, maxImageThreshold );</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  KanungoPredicate noisifiedPredicateIMG( predicateIMG, sampledImage.domain(), noiseLevel );</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1DomainPredicate.html">DomainPredicate<Z3i::Domain></a> domainPredicate( sampledImage.domain() );</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1AndBoolFct2.html">AndBoolFct2</a> andF;</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  Predicate predicate(domainPredicate, noisifiedPredicateIMG, andF );</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  </div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  </div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1HyperRectDomain.html">Z3i::Domain</a> domain = sampledImage.domain();</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html">Z3i::KSpace</a> K;</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  <span class="keywordtype">bool</span> space_ok = K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a15dcbcaae831dd1c36090e6336c177d4">init</a>( domain.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1HyperRectDomain.html#a57d51405819b9b13110d7b84d0a154d8">lowerBound</a>()-Z3i::Domain::Point::diagonal(),</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  domain.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1HyperRectDomain.html#a0a1a964e1595dd2651a76e3cfb46fdf4">upperBound</a>()+Z3i::Domain::Point::diagonal(), <span class="keyword">true</span> );</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  <span class="keywordflow">if</span> (!space_ok)</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  {</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a1e786a1f3b1047e92b73c82f67e3c295">error</a>() << <span class="stringliteral">"Error in the Khalimsky space construction."</span><<std::endl;</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  <span class="keywordflow">return</span> 2;</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  }</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1CanonicSCellEmbedder.html">CanonicSCellEmbedder< KSpace ></a> embedder( K );</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1SurfelAdjacency.html">SurfelAdjacency< Z3i::KSpace::dimension ></a> Sadj( <span class="keyword">true</span> );</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#afa3a2874289734884107b1ce68ccb93d">endBlock</a>();</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  <span class="comment">// Viewer settings</span></div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  </div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  </div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  <span class="comment">// Extraction of components</span></div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a0a02413be83a0f38f23ed5cb45c2bcc4">KSpace::SurfelSet</a> SurfelSet;</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1SetOfSurfels.html">SetOfSurfels< KSpace, SurfelSet ></a> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1SetOfSurfels.html">MySetOfSurfels</a>;</div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1DigitalSurface.html">DigitalSurface< MySetOfSurfels ></a> MyDigitalSurface;</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  </div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  </div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  </div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a352b7160bf722e2f0bcbee5d0bad6ef3">beginBlock</a>(<span class="stringliteral">"Extracting surfaces"</span>);</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  std::vector< std::vector<SCell > > vectConnectedSCell;</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Surfaces.html#a19b214170d160153376c4ecf3497de3f">Surfaces<KSpace>::extractAllConnectedSCell</a>(vectConnectedSCell,K, Sadj, predicate, <span class="keyword">false</span>);</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  std::ofstream outDat;</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  <span class="keywordflow">if</span>( enable_dat )</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  {</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#ad054990834d2763627166540087a2980">info</a>() << <span class="stringliteral">"Exporting curvature as dat file: "</span><< export_dat_filename <<std::endl;</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  outDat.open( export_dat_filename.c_str() );</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  outDat << <span class="stringliteral">"# data exported from 3dCurvatureViewer implementing the II curvature estimator (Coeurjolly, D.; Lachaud, J.O; Levallois, J., (2013). Integral based Curvature"</span></div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  << <span class="stringliteral">" Estimators in Digital Geometry. DGCI 2013.) "</span> << std::endl;</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  outDat << <span class="stringliteral">"# format: surfel coordinates (in Khalimsky space) curvature: "</span><< mode << std::endl;</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  }</div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  </div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#ad054990834d2763627166540087a2980">info</a>()<<<span class="stringliteral">"Number of components= "</span><<vectConnectedSCell.size()<<std::endl;</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#afa3a2874289734884107b1ce68ccb93d">endBlock</a>();</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  </div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  <span class="keywordflow">if</span>( vectConnectedSCell.size() == 0 )</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  {</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a1e786a1f3b1047e92b73c82f67e3c295">error</a>()<< <span class="stringliteral">"No surface component exists. Please check the vol file threshold parameter."</span>;</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#ad054990834d2763627166540087a2980">info</a>()<<std::endl;</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  exit(2);</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  }</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  </div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  QApplication application( argc, argv );</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Viewer3D.html">Viewer3D<Z3i::Space, Z3i::KSpace></a> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Viewer3D.html">Viewer</a>;</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Board3D.html">Board3D<Z3i::Space, Z3i::KSpace></a> Board;</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  </div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Viewer3D.html">Viewer</a> viewer( K );</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  Board board( K );</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  </div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  <span class="keywordflow">if</span>( enable_visu )</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  {</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  viewer.show();</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  }</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  </div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0;</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> max_size = 0;</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <span class="keywordflow">for</span>( <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> ii = 0; ii<vectConnectedSCell.size(); ++ii )</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  {</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  <span class="keywordflow">if</span>( vectConnectedSCell[ii].size() <= threshold )</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  {</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <span class="keywordflow">continue</span>;</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  }</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  <span class="keywordflow">if</span>( vectConnectedSCell[ii].size() > max_size )</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  {</div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  max_size = vectConnectedSCell[ii].size();</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  i = ii;</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  }</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  }</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  </div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1SetOfSurfels.html">MySetOfSurfels</a> aSet(K, Sadj);</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  </div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  <span class="keywordflow">for</span>( std::vector<SCell>::const_iterator it = vectConnectedSCell.at(i).begin();</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  it != vectConnectedSCell.at(i).end();</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  ++it )</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  {</div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  aSet.surfelSet().insert( *it);</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span>  }</div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  </div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  MyDigitalSurface digSurf( aSet );</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  </div>
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  </div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1DepthFirstVisitor.html">DepthFirstVisitor<MyDigitalSurface></a> Visitor;</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1GraphVisitorRange.html">GraphVisitorRange< Visitor ></a> VisitorRange;</div>
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span>  <span class="keyword">typedef</span> VisitorRange::ConstIterator SurfelConstIterator;</div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  VisitorRange range( <span class="keyword">new</span> Visitor( digSurf, *digSurf.begin() ) );</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span>  SurfelConstIterator abegin = range.begin();</div>
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  SurfelConstIterator aend = range.end();</div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  </div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  VisitorRange range2( <span class="keyword">new</span> Visitor( digSurf, *digSurf.begin() ) );</div>
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  SurfelConstIterator abegin2 = range2.begin();</div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  </div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a352b7160bf722e2f0bcbee5d0bad6ef3">beginBlock</a>(<span class="stringliteral">"Curvature computation on a component"</span>);</div>
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span>  <span class="keywordflow">if</span>( ( mode.compare(<span class="stringliteral">"gaussian"</span>) == 0 ) || ( mode.compare(<span class="stringliteral">"mean"</span>) == 0 )</div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  || ( mode.compare(<span class="stringliteral">"k1"</span>) == 0 ) || ( mode.compare(<span class="stringliteral">"k2"</span>) == 0 ))</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  {</div>
<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  <span class="keyword">typedef</span> <span class="keywordtype">double</span> Quantity;</div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  std::vector< Quantity > results;</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  std::back_insert_iterator< std::vector< Quantity > > resultsIterator( results );</div>
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  <span class="keywordflow">if</span> ( mode.compare(<span class="stringliteral">"mean"</span>) == 0 )</div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span>  {</div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1IIMeanCurvature3DFunctor.html">functors::IIMeanCurvature3DFunctor<Z3i::Space></a> MyIICurvatureFunctor;</div>
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantVolumeEstimator.html">IntegralInvariantVolumeEstimator<Z3i::KSpace, Predicate, MyIICurvatureFunctor></a> MyIIEstimator;</div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span>  </div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span>  MyIICurvatureFunctor functor;</div>
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  functor.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantVolumeEstimator.html#a66c790daf8df00539d1a111231abaa2a">init</a>( h, re_convolution_kernel );</div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  </div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  MyIIEstimator estimator( functor );</div>
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  estimator.attach( K, predicate );</div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  estimator.setParams( re_convolution_kernel/h );</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  estimator.init( h, abegin, aend );</div>
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  </div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  estimator.eval( abegin, aend, resultsIterator );</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  }</div>
<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span> ( mode.compare(<span class="stringliteral">"gaussian"</span>) == 0 )</div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  {</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1IIGaussianCurvature3DFunctor.html">functors::IIGaussianCurvature3DFunctor<Z3i::Space></a> MyIICurvatureFunctor;</div>
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html">IntegralInvariantCovarianceEstimator<Z3i::KSpace, Predicate, MyIICurvatureFunctor></a> MyIIEstimator;</div>
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  </div>
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span>  MyIICurvatureFunctor functor;</div>
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span>  functor.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html#a9c3d4a0716c8471fa0c49e02668758c0">init</a>( h, re_convolution_kernel );</div>
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span>  </div>
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span>  MyIIEstimator estimator( functor ); estimator.attach( K,</div>
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span>  predicate ); estimator.setParams( re_convolution_kernel/h );</div>
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  estimator.init( h, abegin, aend );</div>
<div class="line"><a name="l00432"></a><span class="lineno"> 432</span>  </div>
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  estimator.eval( abegin, aend, resultsIterator );</div>
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  }</div>
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span> ( mode.compare(<span class="stringliteral">"k1"</span>) == 0 )</div>
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  {</div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1IIFirstPrincipalCurvature3DFunctor.html">functors::IIFirstPrincipalCurvature3DFunctor<Z3i::Space></a> MyIICurvatureFunctor;</div>
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html">IntegralInvariantCovarianceEstimator<Z3i::KSpace, Predicate, MyIICurvatureFunctor></a> MyIIEstimator;</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  </div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  MyIICurvatureFunctor functor;</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  functor.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html#a9c3d4a0716c8471fa0c49e02668758c0">init</a>( h, re_convolution_kernel );</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  </div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  MyIIEstimator estimator( functor );</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  estimator.attach( K, predicate );</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  estimator.setParams( re_convolution_kernel/h );</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  estimator.init( h, abegin, aend );</div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  </div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  estimator.eval( abegin, aend, resultsIterator );</div>
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  }</div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span> ( mode.compare(<span class="stringliteral">"k2"</span>) == 0 )</div>
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  {</div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1IISecondPrincipalCurvature3DFunctor.html">functors::IISecondPrincipalCurvature3DFunctor<Z3i::Space></a> MyIICurvatureFunctor;</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html">IntegralInvariantCovarianceEstimator<Z3i::KSpace, Predicate, MyIICurvatureFunctor></a> MyIIEstimator;</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  </div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  MyIICurvatureFunctor functor;</div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  functor.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html#a9c3d4a0716c8471fa0c49e02668758c0">init</a>( h, re_convolution_kernel );</div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span>  </div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span>  MyIIEstimator estimator( functor );</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  estimator.attach( K, predicate );</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span>  estimator.setParams( re_convolution_kernel/h );</div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span>  estimator.init( h, abegin, aend );</div>
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  </div>
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span>  estimator.eval( abegin, aend, resultsIterator );</div>
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span>  }</div>
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#afa3a2874289734884107b1ce68ccb93d">endBlock</a>();</div>
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  </div>
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span>  </div>
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span>  <span class="comment">// Drawing results</span></div>
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a352b7160bf722e2f0bcbee5d0bad6ef3">beginBlock</a>(<span class="stringliteral">"Visualisation"</span>);</div>
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  Quantity min = results[ 0 ];</div>
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span>  Quantity max = results[ 0 ];</div>
<div class="line"><a name="l00472"></a><span class="lineno"> 472</span>  <span class="keywordflow">for</span> ( <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 1; i < results.size(); ++i )</div>
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  {</div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  <span class="keywordflow">if</span> ( results[ i ] < min )</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  {</div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span>  min = results[ i ];</div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  }</div>
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span> ( results[ i ] > max )</div>
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  {</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span>  max = results[ i ];</div>
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  }</div>
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span>  }</div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#ad054990834d2763627166540087a2980">info</a>() << <span class="stringliteral">"Max value= "</span><<max<<<span class="stringliteral">" min value= "</span><<min<<std::endl;</div>
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span>  ASSERT( min <= max );</div>
<div class="line"><a name="l00485"></a><span class="lineno"> 485</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1GradientColorMap.html">GradientColorMap< Quantity ></a> Gradient;</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  Gradient cmap_grad( min, (max==min)? max+1: max );</div>
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  cmap_grad.addColor( <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a>( 50, 50, 255 ) );</div>
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span>  cmap_grad.addColor( <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a>( 255, 0, 0 ) );</div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  cmap_grad.addColor( <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a>( 255, 255, 10 ) );</div>
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  </div>
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  <span class="keywordflow">if</span>( enable_visu )</div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  {</div>
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  viewer << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SetMode3D.html">SetMode3D</a>((*abegin2).className(), <span class="stringliteral">"Basic"</span> );</div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  }</div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  <span class="keywordflow">if</span>( enable_obj )</div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  {</div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span>  board << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SetMode3D.html">SetMode3D</a>((K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#ab4acf92d6aac9ace694f79c3ecda674d">unsigns</a>(*abegin2)).className(), <span class="stringliteral">"Basic"</span> );</div>
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span>  }</div>
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span>  </div>
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span>  </div>
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  <span class="keywordflow">for</span> ( <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < results.size(); ++i )</div>
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  {</div>
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span>  <span class="keywordflow">if</span>( enable_visu )</div>
<div class="line"><a name="l00507"></a><span class="lineno"> 507</span>  {</div>
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  viewer << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1CustomColors3D.html">CustomColors3D</a>( <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html#ac26d8585885e7a354893b7e93c6a9dda">Color::Black</a>, cmap_grad( results[ i ] ));</div>
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span>  viewer << *abegin2;</div>
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span>  }</div>
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  </div>
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  <span class="keywordflow">if</span>( enable_obj )</div>
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  {</div>
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  board << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1CustomColors3D.html">CustomColors3D</a>( <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html#ac26d8585885e7a354893b7e93c6a9dda">Color::Black</a>, cmap_grad( results[ i ] ));</div>
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span>  board << K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#ab4acf92d6aac9ace694f79c3ecda674d">unsigns</a>(*abegin2);</div>
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span>  }</div>
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  </div>
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span>  <span class="keywordflow">if</span>( enable_dat )</div>
<div class="line"><a name="l00520"></a><span class="lineno"> 520</span>  {</div>
<div class="line"><a name="l00521"></a><span class="lineno"> 521</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IteratorCompletionTraits_3_01ArrayImageAdapter_3_01TArrayIterator_00_01TDomain_01_4_01_4_1_1DistanceFunctor.html#af185de5027177db2d1b4a0b775be8c3f">Point</a> kCoords = K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#ab09c69b9ad69da8062e0d6a83b6d9342">uKCoords</a>(K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#ab4acf92d6aac9ace694f79c3ecda674d">unsigns</a>(*abegin2));</div>
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span>  outDat << kCoords[0] << <span class="stringliteral">" "</span> << kCoords[1] << <span class="stringliteral">" "</span> << kCoords[2] << <span class="stringliteral">" "</span> << results[i] << std::endl;</div>
<div class="line"><a name="l00523"></a><span class="lineno"> 523</span>  }</div>
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span>  </div>
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span>  ++abegin2;</div>
<div class="line"><a name="l00526"></a><span class="lineno"> 526</span>  }</div>
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span>  }</div>
<div class="line"><a name="l00528"></a><span class="lineno"> 528</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span>  {</div>
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">Z3i::Space::RealVector</a> Quantity;</div>
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span>  std::vector< Quantity > results;</div>
<div class="line"><a name="l00532"></a><span class="lineno"> 532</span>  std::back_insert_iterator< std::vector< Quantity > > resultsIterator( results );</div>
<div class="line"><a name="l00533"></a><span class="lineno"> 533</span>  </div>
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span>  <span class="keywordflow">if</span>( mode.compare(<span class="stringliteral">"prindir1"</span>) == 0 )</div>
<div class="line"><a name="l00535"></a><span class="lineno"> 535</span>  {</div>
<div class="line"><a name="l00536"></a><span class="lineno"> 536</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1IIFirstPrincipalDirectionFunctor.html">functors::IIFirstPrincipalDirectionFunctor<Z3i::Space></a> MyIICurvatureFunctor;</div>
<div class="line"><a name="l00537"></a><span class="lineno"> 537</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html">IntegralInvariantCovarianceEstimator<Z3i::KSpace, Predicate, MyIICurvatureFunctor></a> MyIIEstimator;</div>
<div class="line"><a name="l00538"></a><span class="lineno"> 538</span>  </div>
<div class="line"><a name="l00539"></a><span class="lineno"> 539</span>  MyIICurvatureFunctor functor;</div>
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span>  functor.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html#a9c3d4a0716c8471fa0c49e02668758c0">init</a>( h, re_convolution_kernel );</div>
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span>  </div>
<div class="line"><a name="l00542"></a><span class="lineno"> 542</span>  MyIIEstimator estimator( functor );</div>
<div class="line"><a name="l00543"></a><span class="lineno"> 543</span>  estimator.attach( K, predicate );</div>
<div class="line"><a name="l00544"></a><span class="lineno"> 544</span>  estimator.setParams( re_convolution_kernel/h );</div>
<div class="line"><a name="l00545"></a><span class="lineno"> 545</span>  estimator.init( h, abegin, aend );</div>
<div class="line"><a name="l00546"></a><span class="lineno"> 546</span>  </div>
<div class="line"><a name="l00547"></a><span class="lineno"> 547</span>  estimator.eval( abegin, aend, resultsIterator );</div>
<div class="line"><a name="l00548"></a><span class="lineno"> 548</span>  }</div>
<div class="line"><a name="l00549"></a><span class="lineno"> 549</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( mode.compare(<span class="stringliteral">"prindir2"</span>) == 0 )</div>
<div class="line"><a name="l00550"></a><span class="lineno"> 550</span>  {</div>
<div class="line"><a name="l00551"></a><span class="lineno"> 551</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1IISecondPrincipalDirectionFunctor.html">functors::IISecondPrincipalDirectionFunctor<Z3i::Space></a> MyIICurvatureFunctor;</div>
<div class="line"><a name="l00552"></a><span class="lineno"> 552</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html">IntegralInvariantCovarianceEstimator<Z3i::KSpace, Predicate, MyIICurvatureFunctor></a> MyIIEstimator;</div>
<div class="line"><a name="l00553"></a><span class="lineno"> 553</span>  </div>
<div class="line"><a name="l00554"></a><span class="lineno"> 554</span>  MyIICurvatureFunctor functor;</div>
<div class="line"><a name="l00555"></a><span class="lineno"> 555</span>  functor.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html#a9c3d4a0716c8471fa0c49e02668758c0">init</a>( h, re_convolution_kernel );</div>
<div class="line"><a name="l00556"></a><span class="lineno"> 556</span>  </div>
<div class="line"><a name="l00557"></a><span class="lineno"> 557</span>  MyIIEstimator estimator( functor );</div>
<div class="line"><a name="l00558"></a><span class="lineno"> 558</span>  estimator.attach( K, predicate );</div>
<div class="line"><a name="l00559"></a><span class="lineno"> 559</span>  estimator.setParams( re_convolution_kernel/h );</div>
<div class="line"><a name="l00560"></a><span class="lineno"> 560</span>  estimator.init( h, abegin, aend );</div>
<div class="line"><a name="l00561"></a><span class="lineno"> 561</span>  </div>
<div class="line"><a name="l00562"></a><span class="lineno"> 562</span>  estimator.eval( abegin, aend, resultsIterator );</div>
<div class="line"><a name="l00563"></a><span class="lineno"> 563</span>  }<span class="keywordflow">else</span> <span class="keywordflow">if</span>( mode.compare(<span class="stringliteral">"normal"</span>) == 0 )</div>
<div class="line"><a name="l00564"></a><span class="lineno"> 564</span>  {</div>
<div class="line"><a name="l00565"></a><span class="lineno"> 565</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1IINormalDirectionFunctor.html">functors::IINormalDirectionFunctor<Z3i::Space></a> MyIICurvatureFunctor;</div>
<div class="line"><a name="l00566"></a><span class="lineno"> 566</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html">IntegralInvariantCovarianceEstimator<Z3i::KSpace, Predicate, MyIICurvatureFunctor></a> MyIIEstimator;</div>
<div class="line"><a name="l00567"></a><span class="lineno"> 567</span>  </div>
<div class="line"><a name="l00568"></a><span class="lineno"> 568</span>  MyIICurvatureFunctor functor;</div>
<div class="line"><a name="l00569"></a><span class="lineno"> 569</span>  functor.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html#a9c3d4a0716c8471fa0c49e02668758c0">init</a>( h, re_convolution_kernel );</div>
<div class="line"><a name="l00570"></a><span class="lineno"> 570</span>  </div>
<div class="line"><a name="l00571"></a><span class="lineno"> 571</span>  MyIIEstimator estimator( functor );</div>
<div class="line"><a name="l00572"></a><span class="lineno"> 572</span>  estimator.attach( K, predicate );</div>
<div class="line"><a name="l00573"></a><span class="lineno"> 573</span>  estimator.setParams( re_convolution_kernel/h );</div>
<div class="line"><a name="l00574"></a><span class="lineno"> 574</span>  estimator.init( h, abegin, aend );</div>
<div class="line"><a name="l00575"></a><span class="lineno"> 575</span>  </div>
<div class="line"><a name="l00576"></a><span class="lineno"> 576</span>  estimator.eval( abegin, aend, resultsIterator );</div>
<div class="line"><a name="l00577"></a><span class="lineno"> 577</span>  }</div>
<div class="line"><a name="l00578"></a><span class="lineno"> 578</span>  </div>
<div class="line"><a name="l00579"></a><span class="lineno"> 579</span>  <span class="comment">//Visualization + export</span></div>
<div class="line"><a name="l00580"></a><span class="lineno"> 580</span>  </div>
<div class="line"><a name="l00581"></a><span class="lineno"> 581</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00582"></a><span class="lineno"> 582</span>  <span class="keywordflow">if</span>( enable_visu )</div>
<div class="line"><a name="l00583"></a><span class="lineno"> 583</span>  {</div>
<div class="line"><a name="l00584"></a><span class="lineno"> 584</span>  viewer << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SetMode3D.html">SetMode3D</a>(K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#adfec57bd5afe263eeeba523ed5a447fc">uCell</a>( K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a40a3d85d80f509bd392eeaa7e5dd420d">sKCoords</a>(*abegin2) ).<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1KhalimskyCell.html#a56fca7aee5161bd061b40658794c381d">className</a>(), <span class="stringliteral">"Basic"</span> );</div>
<div class="line"><a name="l00585"></a><span class="lineno"> 585</span>  }</div>
<div class="line"><a name="l00586"></a><span class="lineno"> 586</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00587"></a><span class="lineno"> 587</span>  </div>
<div class="line"><a name="l00588"></a><span class="lineno"> 588</span>  <span class="keywordflow">if</span>( enable_obj )</div>
<div class="line"><a name="l00589"></a><span class="lineno"> 589</span>  {</div>
<div class="line"><a name="l00590"></a><span class="lineno"> 590</span>  board << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SetMode3D.html">SetMode3D</a>(K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#adfec57bd5afe263eeeba523ed5a447fc">uCell</a>( K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a40a3d85d80f509bd392eeaa7e5dd420d">sKCoords</a>(*abegin2) ).<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1KhalimskyCell.html#a56fca7aee5161bd061b40658794c381d">className</a>(), <span class="stringliteral">"Basic"</span> );</div>
<div class="line"><a name="l00591"></a><span class="lineno"> 591</span>  }</div>
<div class="line"><a name="l00592"></a><span class="lineno"> 592</span>  </div>
<div class="line"><a name="l00593"></a><span class="lineno"> 593</span>  <span class="keywordflow">for</span> ( <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < results.size(); ++i )</div>
<div class="line"><a name="l00594"></a><span class="lineno"> 594</span>  {</div>
<div class="line"><a name="l00595"></a><span class="lineno"> 595</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a8fbe8c8d47ca5c36ced14284ac62613d">DGtal::Dimension</a> kDim = K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a3392f23617850b7f2592fc26c2fced19">sOrthDir</a>( *abegin2 );</div>
<div class="line"><a name="l00596"></a><span class="lineno"> 596</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SignedKhalimskyCell.html">SCell</a> outer = K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#af9a29c7b1b3ac42a1fb75a3a4d35dbc7">sIndirectIncident</a>( *abegin2, kDim);</div>
<div class="line"><a name="l00597"></a><span class="lineno"> 597</span>  <span class="keywordflow">if</span> ( predicate(<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">Z3i::Point</a>(embedder(outer), functors::Round<>()) ))</div>
<div class="line"><a name="l00598"></a><span class="lineno"> 598</span>  {</div>
<div class="line"><a name="l00599"></a><span class="lineno"> 599</span>  outer = K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a7b7bca3fd0e29bfd0128895d572141ef">sDirectIncident</a>( *abegin2, kDim);</div>
<div class="line"><a name="l00600"></a><span class="lineno"> 600</span>  }</div>
<div class="line"><a name="l00601"></a><span class="lineno"> 601</span>  </div>
<div class="line"><a name="l00602"></a><span class="lineno"> 602</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1KhalimskyCell.html">Cell</a> unsignedSurfel = K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#adfec57bd5afe263eeeba523ed5a447fc">uCell</a>( K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a40a3d85d80f509bd392eeaa7e5dd420d">sKCoords</a>(*abegin2) );</div>
<div class="line"><a name="l00603"></a><span class="lineno"> 603</span>  </div>
<div class="line"><a name="l00604"></a><span class="lineno"> 604</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00605"></a><span class="lineno"> 605</span>  <span class="keywordflow">if</span>( enable_visu )</div>
<div class="line"><a name="l00606"></a><span class="lineno"> 606</span>  {</div>
<div class="line"><a name="l00607"></a><span class="lineno"> 607</span>  viewer << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1CustomColors3D.html">CustomColors3D</a>( <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">DGtal::Color</a>(255,255,255,255),</div>
<div class="line"><a name="l00608"></a><span class="lineno"> 608</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">DGtal::Color</a>(255,255,255,255))</div>
<div class="line"><a name="l00609"></a><span class="lineno"> 609</span>  << unsignedSurfel;</div>
<div class="line"><a name="l00610"></a><span class="lineno"> 610</span>  }</div>
<div class="line"><a name="l00611"></a><span class="lineno"> 611</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00612"></a><span class="lineno"> 612</span>  </div>
<div class="line"><a name="l00613"></a><span class="lineno"> 613</span>  <span class="keywordflow">if</span>( enable_obj )</div>
<div class="line"><a name="l00614"></a><span class="lineno"> 614</span>  {</div>
<div class="line"><a name="l00615"></a><span class="lineno"> 615</span>  board << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1CustomColors3D.html">CustomColors3D</a>( <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">DGtal::Color</a>(255,255,255,255),</div>
<div class="line"><a name="l00616"></a><span class="lineno"> 616</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">DGtal::Color</a>(255,255,255,255))</div>
<div class="line"><a name="l00617"></a><span class="lineno"> 617</span>  << unsignedSurfel;</div>
<div class="line"><a name="l00618"></a><span class="lineno"> 618</span>  }</div>
<div class="line"><a name="l00619"></a><span class="lineno"> 619</span>  </div>
<div class="line"><a name="l00620"></a><span class="lineno"> 620</span>  <span class="keywordflow">if</span>( enable_dat )</div>
<div class="line"><a name="l00621"></a><span class="lineno"> 621</span>  {</div>
<div class="line"><a name="l00622"></a><span class="lineno"> 622</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IteratorCompletionTraits_3_01ArrayImageAdapter_3_01TArrayIterator_00_01TDomain_01_4_01_4_1_1DistanceFunctor.html#af185de5027177db2d1b4a0b775be8c3f">Point</a> kCoords = K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#ab09c69b9ad69da8062e0d6a83b6d9342">uKCoords</a>(K.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#ab4acf92d6aac9ace694f79c3ecda674d">unsigns</a>(*abegin2));</div>
<div class="line"><a name="l00623"></a><span class="lineno"> 623</span>  outDat << kCoords[0] << <span class="stringliteral">" "</span> << kCoords[1] << <span class="stringliteral">" "</span> << kCoords[2] << <span class="stringliteral">" "</span></div>
<div class="line"><a name="l00624"></a><span class="lineno"> 624</span>  << results[i][0] << <span class="stringliteral">" "</span> << results[i][1] << <span class="stringliteral">" "</span> << results[i][2]</div>
<div class="line"><a name="l00625"></a><span class="lineno"> 625</span>  << std::endl;</div>
<div class="line"><a name="l00626"></a><span class="lineno"> 626</span>  }</div>
<div class="line"><a name="l00627"></a><span class="lineno"> 627</span>  </div>
<div class="line"><a name="l00628"></a><span class="lineno"> 628</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">RealPoint</a> center = embedder( outer );</div>
<div class="line"><a name="l00629"></a><span class="lineno"> 629</span>  </div>
<div class="line"><a name="l00630"></a><span class="lineno"> 630</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00631"></a><span class="lineno"> 631</span>  <span class="keywordflow">if</span>( enable_visu )</div>
<div class="line"><a name="l00632"></a><span class="lineno"> 632</span>  {</div>
<div class="line"><a name="l00633"></a><span class="lineno"> 633</span>  <span class="keywordflow">if</span>( mode.compare(<span class="stringliteral">"prindir1"</span>) == 0 )</div>
<div class="line"><a name="l00634"></a><span class="lineno"> 634</span>  {</div>
<div class="line"><a name="l00635"></a><span class="lineno"> 635</span>  viewer.setLineColor( AXIS_COLOR_BLUE );</div>
<div class="line"><a name="l00636"></a><span class="lineno"> 636</span>  }</div>
<div class="line"><a name="l00637"></a><span class="lineno"> 637</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( mode.compare(<span class="stringliteral">"prindir2"</span>) == 0 )</div>
<div class="line"><a name="l00638"></a><span class="lineno"> 638</span>  {</div>
<div class="line"><a name="l00639"></a><span class="lineno"> 639</span>  viewer.setLineColor( AXIS_COLOR_RED );</div>
<div class="line"><a name="l00640"></a><span class="lineno"> 640</span>  }</div>
<div class="line"><a name="l00641"></a><span class="lineno"> 641</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( mode.compare(<span class="stringliteral">"normal"</span>) == 0 )</div>
<div class="line"><a name="l00642"></a><span class="lineno"> 642</span>  {</div>
<div class="line"><a name="l00643"></a><span class="lineno"> 643</span>  viewer.setLineColor( AXIS_COLOR_GREEN );</div>
<div class="line"><a name="l00644"></a><span class="lineno"> 644</span>  }</div>
<div class="line"><a name="l00645"></a><span class="lineno"> 645</span>  </div>
<div class="line"><a name="l00646"></a><span class="lineno"> 646</span>  viewer.addLine (</div>
<div class="line"><a name="l00647"></a><span class="lineno"> 647</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">RealPoint</a>(</div>
<div class="line"><a name="l00648"></a><span class="lineno"> 648</span>  center[0] - 0.5 * results[i][0],</div>
<div class="line"><a name="l00649"></a><span class="lineno"> 649</span>  center[1] - 0.5 * results[i][1],</div>
<div class="line"><a name="l00650"></a><span class="lineno"> 650</span>  center[2] - 0.5 * results[i][2]</div>
<div class="line"><a name="l00651"></a><span class="lineno"> 651</span>  ),</div>
<div class="line"><a name="l00652"></a><span class="lineno"> 652</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">RealPoint</a>(</div>
<div class="line"><a name="l00653"></a><span class="lineno"> 653</span>  center[0] + 0.5 * results[i][0],</div>
<div class="line"><a name="l00654"></a><span class="lineno"> 654</span>  center[1] + 0.5 * results[i][1],</div>
<div class="line"><a name="l00655"></a><span class="lineno"> 655</span>  center[2] + 0.5 * results[i][2]</div>
<div class="line"><a name="l00656"></a><span class="lineno"> 656</span>  ),</div>
<div class="line"><a name="l00657"></a><span class="lineno"> 657</span>  AXIS_LINESIZE );</div>
<div class="line"><a name="l00658"></a><span class="lineno"> 658</span>  }</div>
<div class="line"><a name="l00659"></a><span class="lineno"> 659</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00660"></a><span class="lineno"> 660</span>  </div>
<div class="line"><a name="l00661"></a><span class="lineno"> 661</span>  <span class="keywordflow">if</span>( enable_obj )</div>
<div class="line"><a name="l00662"></a><span class="lineno"> 662</span>  {</div>
<div class="line"><a name="l00663"></a><span class="lineno"> 663</span>  <span class="keywordflow">if</span>( mode.compare(<span class="stringliteral">"prindir1"</span>) == 0 )</div>
<div class="line"><a name="l00664"></a><span class="lineno"> 664</span>  {</div>
<div class="line"><a name="l00665"></a><span class="lineno"> 665</span>  board.setFillColor( AXIS_COLOR_BLUE );</div>
<div class="line"><a name="l00666"></a><span class="lineno"> 666</span>  }</div>
<div class="line"><a name="l00667"></a><span class="lineno"> 667</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( mode.compare(<span class="stringliteral">"prindir2"</span>) == 0 )</div>
<div class="line"><a name="l00668"></a><span class="lineno"> 668</span>  {</div>
<div class="line"><a name="l00669"></a><span class="lineno"> 669</span>  board.setFillColor( AXIS_COLOR_RED );</div>
<div class="line"><a name="l00670"></a><span class="lineno"> 670</span>  }</div>
<div class="line"><a name="l00671"></a><span class="lineno"> 671</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span>( mode.compare(<span class="stringliteral">"normal"</span>) == 0 )</div>
<div class="line"><a name="l00672"></a><span class="lineno"> 672</span>  {</div>
<div class="line"><a name="l00673"></a><span class="lineno"> 673</span>  board.setFillColor( AXIS_COLOR_GREEN );</div>
<div class="line"><a name="l00674"></a><span class="lineno"> 674</span>  }</div>
<div class="line"><a name="l00675"></a><span class="lineno"> 675</span>  </div>
<div class="line"><a name="l00676"></a><span class="lineno"> 676</span>  board.addCylinder (</div>
<div class="line"><a name="l00677"></a><span class="lineno"> 677</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">RealPoint</a>(</div>
<div class="line"><a name="l00678"></a><span class="lineno"> 678</span>  center[0] - 0.5 * results[i][0],</div>
<div class="line"><a name="l00679"></a><span class="lineno"> 679</span>  center[1] - 0.5 * results[i][1],</div>
<div class="line"><a name="l00680"></a><span class="lineno"> 680</span>  center[2] - 0.5 * results[i][2]),</div>
<div class="line"><a name="l00681"></a><span class="lineno"> 681</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">RealPoint</a>(</div>
<div class="line"><a name="l00682"></a><span class="lineno"> 682</span>  center[0] + 0.5 * results[i][0],</div>
<div class="line"><a name="l00683"></a><span class="lineno"> 683</span>  center[1] + 0.5 * results[i][1],</div>
<div class="line"><a name="l00684"></a><span class="lineno"> 684</span>  center[2] + 0.5 * results[i][2]),</div>
<div class="line"><a name="l00685"></a><span class="lineno"> 685</span>  0.2 );</div>
<div class="line"><a name="l00686"></a><span class="lineno"> 686</span>  }</div>
<div class="line"><a name="l00687"></a><span class="lineno"> 687</span>  </div>
<div class="line"><a name="l00688"></a><span class="lineno"> 688</span>  ++abegin2;</div>
<div class="line"><a name="l00689"></a><span class="lineno"> 689</span>  }</div>
<div class="line"><a name="l00690"></a><span class="lineno"> 690</span>  }</div>
<div class="line"><a name="l00691"></a><span class="lineno"> 691</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#afa3a2874289734884107b1ce68ccb93d">endBlock</a>();</div>
<div class="line"><a name="l00692"></a><span class="lineno"> 692</span>  </div>
<div class="line"><a name="l00693"></a><span class="lineno"> 693</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00694"></a><span class="lineno"> 694</span>  <span class="keywordflow">if</span>( enable_visu )</div>
<div class="line"><a name="l00695"></a><span class="lineno"> 695</span>  {</div>
<div class="line"><a name="l00696"></a><span class="lineno"> 696</span>  viewer << Viewer3D<>::updateDisplay;</div>
<div class="line"><a name="l00697"></a><span class="lineno"> 697</span>  }</div>
<div class="line"><a name="l00698"></a><span class="lineno"> 698</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00699"></a><span class="lineno"> 699</span>  <span class="keywordflow">if</span>( enable_obj )</div>
<div class="line"><a name="l00700"></a><span class="lineno"> 700</span>  {</div>
<div class="line"><a name="l00701"></a><span class="lineno"> 701</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#ad054990834d2763627166540087a2980">info</a>()<< <span class="stringliteral">"Exporting object: "</span> << export_obj_filename << <span class="stringliteral">" ..."</span>;</div>
<div class="line"><a name="l00702"></a><span class="lineno"> 702</span>  board.saveOBJ(export_obj_filename,normalization);</div>
<div class="line"><a name="l00703"></a><span class="lineno"> 703</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#ad054990834d2763627166540087a2980">info</a>() << <span class="stringliteral">"[done]"</span> << std::endl;</div>
<div class="line"><a name="l00704"></a><span class="lineno"> 704</span>  }</div>
<div class="line"><a name="l00705"></a><span class="lineno"> 705</span>  <span class="keywordflow">if</span>( enable_dat )</div>
<div class="line"><a name="l00706"></a><span class="lineno"> 706</span>  {</div>
<div class="line"><a name="l00707"></a><span class="lineno"> 707</span>  outDat.close();</div>
<div class="line"><a name="l00708"></a><span class="lineno"> 708</span>  }</div>
<div class="line"><a name="l00709"></a><span class="lineno"> 709</span>  </div>
<div class="line"><a name="l00710"></a><span class="lineno"> 710</span> <span class="preprocessor">#ifdef WITH_VISU3D_QGLVIEWER</span></div>
<div class="line"><a name="l00711"></a><span class="lineno"> 711</span>  <span class="keywordflow">if</span>( enable_visu )</div>
<div class="line"><a name="l00712"></a><span class="lineno"> 712</span>  {</div>
<div class="line"><a name="l00713"></a><span class="lineno"> 713</span>  <span class="keywordflow">return</span> application.exec();</div>
<div class="line"><a name="l00714"></a><span class="lineno"> 714</span>  }</div>
<div class="line"><a name="l00715"></a><span class="lineno"> 715</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00716"></a><span class="lineno"> 716</span>  </div>
<div class="line"><a name="l00717"></a><span class="lineno"> 717</span>  <span class="keywordflow">return</span> 0;</div>
<div class="line"><a name="l00718"></a><span class="lineno"> 718</span> }</div>
<div class="line"><a name="l00719"></a><span class="lineno"> 719</span>  </div>
<div class="ttc" id="a3dHeightMapViewer_8cpp_html_a3c04138a5bfe5d72780bb7e82a18e627"><div class="ttname"><a href="3dHeightMapViewer_8cpp.html#a3c04138a5bfe5d72780bb7e82a18e627">main</a></div><div class="ttdeci">int main(int argc, char **argv)</div><div class="ttdef"><b>Definition:</b> <a href="3dHeightMapViewer_8cpp_source.html#l00206">3dHeightMapViewer.cpp:206</a></div></div>
<div class="ttc" id="aclassDGtal_1_1Board3D_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Board3D.html">DGtal::Board3D</a></div></div>
<div class="ttc" id="aclassDGtal_1_1Color_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">DGtal::Color</a></div></div>
<div class="ttc" id="aclassDGtal_1_1Color_html_ac26d8585885e7a354893b7e93c6a9dda"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html#ac26d8585885e7a354893b7e93c6a9dda">DGtal::Color::Black</a></div><div class="ttdeci">static const Color Black</div></div>
<div class="ttc" id="aclassDGtal_1_1ConstImageAdapter_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1ConstImageAdapter.html">DGtal::ConstImageAdapter</a></div></div>
<div class="ttc" id="aclassDGtal_1_1DepthFirstVisitor_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1DepthFirstVisitor.html">DGtal::DepthFirstVisitor</a></div></div>
<div class="ttc" id="aclassDGtal_1_1DigitalSurface_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1DigitalSurface.html">DGtal::DigitalSurface</a></div></div>
<div class="ttc" id="aclassDGtal_1_1GradientColorMap_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1GradientColorMap.html">DGtal::GradientColorMap</a></div></div>
<div class="ttc" id="aclassDGtal_1_1GraphVisitorRange_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1GraphVisitorRange.html">DGtal::GraphVisitorRange</a></div></div>
<div class="ttc" id="aclassDGtal_1_1HyperRectDomain_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1HyperRectDomain.html">HyperRectDomain< Space ></a></div></div>
<div class="ttc" id="aclassDGtal_1_1HyperRectDomain_html_a0a1a964e1595dd2651a76e3cfb46fdf4"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1HyperRectDomain.html#a0a1a964e1595dd2651a76e3cfb46fdf4">HyperRectDomain< Space >::upperBound</a></div><div class="ttdeci">const Point & upperBound() const</div></div>
<div class="ttc" id="aclassDGtal_1_1HyperRectDomain_html_a57d51405819b9b13110d7b84d0a154d8"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1HyperRectDomain.html#a57d51405819b9b13110d7b84d0a154d8">HyperRectDomain< Space >::lowerBound</a></div><div class="ttdeci">const Point & lowerBound() const</div></div>
<div class="ttc" id="aclassDGtal_1_1ImageContainerBySTLVector_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1ImageContainerBySTLVector.html">DGtal::ImageContainerBySTLVector</a></div></div>
<div class="ttc" id="aclassDGtal_1_1Image_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Image.html">DGtal::Image</a></div></div>
<div class="ttc" id="aclassDGtal_1_1Image_html_a28a1c55de323d0d0ec62d2db03eaf180"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Image.html#a28a1c55de323d0d0ec62d2db03eaf180">DGtal::Image::domain</a></div><div class="ttdeci">const Domain & domain() const</div></div>
<div class="ttc" id="aclassDGtal_1_1Image_html_ace481f886b37a80824817b5f1494df58"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Image.html#ace481f886b37a80824817b5f1494df58">DGtal::Image::Domain</a></div><div class="ttdeci">TImageContainer::Domain Domain</div></div>
<div class="ttc" id="aclassDGtal_1_1Image_html_ad56b43a36c897e64398934c8f7a3b01c"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Image.html#ad56b43a36c897e64398934c8f7a3b01c">DGtal::Image::Value</a></div><div class="ttdeci">TImageContainer::Value Value</div></div>
<div class="ttc" id="aclassDGtal_1_1IntegralInvariantCovarianceEstimator_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html">DGtal::IntegralInvariantCovarianceEstimator</a></div></div>
<div class="ttc" id="aclassDGtal_1_1IntegralInvariantCovarianceEstimator_html_a9c3d4a0716c8471fa0c49e02668758c0"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantCovarianceEstimator.html#a9c3d4a0716c8471fa0c49e02668758c0">DGtal::IntegralInvariantCovarianceEstimator::init</a></div><div class="ttdeci">void init(const double _h, SurfelConstIterator itb, SurfelConstIterator ite)</div></div>
<div class="ttc" id="aclassDGtal_1_1IntegralInvariantVolumeEstimator_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantVolumeEstimator.html">DGtal::IntegralInvariantVolumeEstimator</a></div></div>
<div class="ttc" id="aclassDGtal_1_1IntegralInvariantVolumeEstimator_html_a66c790daf8df00539d1a111231abaa2a"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IntegralInvariantVolumeEstimator.html#a66c790daf8df00539d1a111231abaa2a">DGtal::IntegralInvariantVolumeEstimator::init</a></div><div class="ttdeci">void init(const double _h, SurfelConstIterator itb, SurfelConstIterator ite)</div></div>
<div class="ttc" id="aclassDGtal_1_1IteratorCompletionTraits_3_01ArrayImageAdapter_3_01TArrayIterator_00_01TDomain_01_4_01_4_1_1DistanceFunctor_html_af185de5027177db2d1b4a0b775be8c3f"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1IteratorCompletionTraits_3_01ArrayImageAdapter_3_01TArrayIterator_00_01TDomain_01_4_01_4_1_1DistanceFunctor.html#af185de5027177db2d1b4a0b775be8c3f">Point</a></div><div class="ttdeci">typename Self::Point Point</div></div>
<div class="ttc" id="aclassDGtal_1_1KanungoNoise_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KanungoNoise.html">DGtal::KanungoNoise</a></div></div>
<div class="ttc" id="aclassDGtal_1_1KhalimskySpaceND_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html">DGtal::KhalimskySpaceND</a></div></div>
<div class="ttc" id="aclassDGtal_1_1KhalimskySpaceND_html_a0a02413be83a0f38f23ed5cb45c2bcc4"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a0a02413be83a0f38f23ed5cb45c2bcc4">DGtal::KhalimskySpaceND::SurfelSet</a></div><div class="ttdeci">std::set< SCell > SurfelSet</div></div>
<div class="ttc" id="aclassDGtal_1_1KhalimskySpaceND_html_a15dcbcaae831dd1c36090e6336c177d4"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a15dcbcaae831dd1c36090e6336c177d4">DGtal::KhalimskySpaceND::init</a></div><div class="ttdeci">bool init(const Point &lower, const Point &upper, bool isClosed)</div></div>
<div class="ttc" id="aclassDGtal_1_1KhalimskySpaceND_html_a3392f23617850b7f2592fc26c2fced19"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a3392f23617850b7f2592fc26c2fced19">DGtal::KhalimskySpaceND::sOrthDir</a></div><div class="ttdeci">Dimension sOrthDir(const SCell &s) const</div></div>
<div class="ttc" id="aclassDGtal_1_1KhalimskySpaceND_html_a40a3d85d80f509bd392eeaa7e5dd420d"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a40a3d85d80f509bd392eeaa7e5dd420d">DGtal::KhalimskySpaceND::sKCoords</a></div><div class="ttdeci">const Point & sKCoords(const SCell &c) const</div></div>
<div class="ttc" id="aclassDGtal_1_1KhalimskySpaceND_html_a7b7bca3fd0e29bfd0128895d572141ef"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#a7b7bca3fd0e29bfd0128895d572141ef">DGtal::KhalimskySpaceND::sDirectIncident</a></div><div class="ttdeci">SCell sDirectIncident(const SCell &p, Dimension k) const</div></div>
<div class="ttc" id="aclassDGtal_1_1KhalimskySpaceND_html_ab09c69b9ad69da8062e0d6a83b6d9342"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#ab09c69b9ad69da8062e0d6a83b6d9342">DGtal::KhalimskySpaceND::uKCoords</a></div><div class="ttdeci">const Point & uKCoords(const Cell &c) const</div></div>
<div class="ttc" id="aclassDGtal_1_1KhalimskySpaceND_html_ab4acf92d6aac9ace694f79c3ecda674d"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#ab4acf92d6aac9ace694f79c3ecda674d">DGtal::KhalimskySpaceND::unsigns</a></div><div class="ttdeci">Cell unsigns(const SCell &p) const</div></div>
<div class="ttc" id="aclassDGtal_1_1KhalimskySpaceND_html_adfec57bd5afe263eeeba523ed5a447fc"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#adfec57bd5afe263eeeba523ed5a447fc">DGtal::KhalimskySpaceND::uCell</a></div><div class="ttdeci">Cell uCell(const PreCell &c) const</div></div>
<div class="ttc" id="aclassDGtal_1_1KhalimskySpaceND_html_af9a29c7b1b3ac42a1fb75a3a4d35dbc7"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html#af9a29c7b1b3ac42a1fb75a3a4d35dbc7">DGtal::KhalimskySpaceND::sIndirectIncident</a></div><div class="ttdeci">SCell sIndirectIncident(const SCell &p, Dimension k) const</div></div>
<div class="ttc" id="aclassDGtal_1_1PointVector_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">DGtal::PointVector</a></div></div>
<div class="ttc" id="aclassDGtal_1_1SetOfSurfels_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1SetOfSurfels.html">DGtal::SetOfSurfels</a></div></div>
<div class="ttc" id="aclassDGtal_1_1Surfaces_html_a19b214170d160153376c4ecf3497de3f"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Surfaces.html#a19b214170d160153376c4ecf3497de3f">DGtal::Surfaces::extractAllConnectedSCell</a></div><div class="ttdeci">static void extractAllConnectedSCell(std::vector< std::vector< SCell > > &aVectConnectedSCell, const KSpace &aKSpace, const SurfelAdjacency< KSpace::dimension > &aSurfelAdj, const PointPredicate &pp, bool forceOrientCellExterior=false)</div></div>
<div class="ttc" id="aclassDGtal_1_1SurfelAdjacency_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1SurfelAdjacency.html">DGtal::SurfelAdjacency</a></div></div>
<div class="ttc" id="aclassDGtal_1_1Trace_html_a1e786a1f3b1047e92b73c82f67e3c295"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a1e786a1f3b1047e92b73c82f67e3c295">DGtal::Trace::error</a></div><div class="ttdeci">std::ostream & error()</div></div>
<div class="ttc" id="aclassDGtal_1_1Trace_html_a352b7160bf722e2f0bcbee5d0bad6ef3"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#a352b7160bf722e2f0bcbee5d0bad6ef3">DGtal::Trace::beginBlock</a></div><div class="ttdeci">void beginBlock(const std::string &keyword="")</div></div>
<div class="ttc" id="aclassDGtal_1_1Trace_html_ad054990834d2763627166540087a2980"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#ad054990834d2763627166540087a2980">DGtal::Trace::info</a></div><div class="ttdeci">std::ostream & info()</div></div>
<div class="ttc" id="aclassDGtal_1_1Trace_html_afa3a2874289734884107b1ce68ccb93d"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#afa3a2874289734884107b1ce68ccb93d">DGtal::Trace::endBlock</a></div><div class="ttdeci">double endBlock()</div></div>
<div class="ttc" id="aclassDGtal_1_1Viewer3D_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Viewer3D.html">DGtal::Viewer3D</a></div></div>
<div class="ttc" id="aclassDGtal_1_1functors_1_1BasicDomainSubSampler_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1BasicDomainSubSampler.html">DGtal::functors::BasicDomainSubSampler</a></div></div>
<div class="ttc" id="aclassDGtal_1_1functors_1_1IIFirstPrincipalDirectionFunctor_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1IIFirstPrincipalDirectionFunctor.html">DGtal::functors::IIFirstPrincipalDirectionFunctor</a></div></div>
<div class="ttc" id="aclassDGtal_1_1functors_1_1IINormalDirectionFunctor_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1IINormalDirectionFunctor.html">DGtal::functors::IINormalDirectionFunctor</a></div></div>
<div class="ttc" id="aclassDGtal_1_1functors_1_1IISecondPrincipalDirectionFunctor_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1IISecondPrincipalDirectionFunctor.html">DGtal::functors::IISecondPrincipalDirectionFunctor</a></div></div>
<div class="ttc" id="aclassDGtal_1_1functors_1_1IntervalForegroundPredicate_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1functors_1_1IntervalForegroundPredicate.html">DGtal::functors::IntervalForegroundPredicate</a></div></div>
<div class="ttc" id="anamespaceDGtal_html"><div class="ttname"><a href="namespaceDGtal.html">DGtal</a></div></div>
<div class="ttc" id="anamespaceDGtal_html_a604c07ec391ad12a1f3fb6479993f112"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">DGtal::trace</a></div><div class="ttdeci">Trace trace(traceWriterTerm)</div></div>
<div class="ttc" id="anamespaceDGtal_html_a8fbe8c8d47ca5c36ced14284ac62613d"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a8fbe8c8d47ca5c36ced14284ac62613d">DGtal::Dimension</a></div><div class="ttdeci">DGtal::uint32_t Dimension</div></div>
<div class="ttc" id="anamespaceDGtal_html_ac1e9ac6a329319ae13c51c0c9e92486a"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#ac1e9ac6a329319ae13c51c0c9e92486a">DGtal::int32_t</a></div><div class="ttdeci">boost::int32_t int32_t</div></div>
<div class="ttc" id="astructDGtal_1_1CanonicSCellEmbedder_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1CanonicSCellEmbedder.html">CanonicSCellEmbedder< KSpace ></a></div></div>
<div class="ttc" id="astructDGtal_1_1CustomColors3D_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1CustomColors3D.html">DGtal::CustomColors3D</a></div></div>
<div class="ttc" id="astructDGtal_1_1GenericReader_html_a7e2fbfbe0d3c94e6bc4ca67e96c01f7c"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1GenericReader.html#a7e2fbfbe0d3c94e6bc4ca67e96c01f7c">DGtal::GenericReader::import</a></div><div class="ttdeci">static TContainer import(const std::string &filename, std::vector< unsigned int > dimSpace=std::vector< unsigned int >())</div></div>
<div class="ttc" id="astructDGtal_1_1KhalimskyCell_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1KhalimskyCell.html">KhalimskyCell< dim, Integer ></a></div></div>
<div class="ttc" id="astructDGtal_1_1KhalimskyCell_html_a56fca7aee5161bd061b40658794c381d"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1KhalimskyCell.html#a56fca7aee5161bd061b40658794c381d">KhalimskyCell< dim, Integer >::className</a></div><div class="ttdeci">std::string className() const</div></div>
<div class="ttc" id="astructDGtal_1_1SetMode3D_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SetMode3D.html">DGtal::SetMode3D</a></div></div>
<div class="ttc" id="astructDGtal_1_1SignedKhalimskyCell_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SignedKhalimskyCell.html">DGtal::SignedKhalimskyCell</a></div></div>
<div class="ttc" id="astructDGtal_1_1functors_1_1AndBoolFct2_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1AndBoolFct2.html">DGtal::functors::AndBoolFct2</a></div></div>
<div class="ttc" id="astructDGtal_1_1functors_1_1BinaryPointPredicate_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1BinaryPointPredicate.html">DGtal::functors::BinaryPointPredicate</a></div></div>
<div class="ttc" id="astructDGtal_1_1functors_1_1DomainPredicate_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1DomainPredicate.html">DGtal::functors::DomainPredicate</a></div></div>
<div class="ttc" id="astructDGtal_1_1functors_1_1IIFirstPrincipalCurvature3DFunctor_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1IIFirstPrincipalCurvature3DFunctor.html">DGtal::functors::IIFirstPrincipalCurvature3DFunctor</a></div></div>
<div class="ttc" id="astructDGtal_1_1functors_1_1IIGaussianCurvature3DFunctor_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1IIGaussianCurvature3DFunctor.html">DGtal::functors::IIGaussianCurvature3DFunctor</a></div></div>
<div class="ttc" id="astructDGtal_1_1functors_1_1IIMeanCurvature3DFunctor_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1IIMeanCurvature3DFunctor.html">DGtal::functors::IIMeanCurvature3DFunctor</a></div></div>
<div class="ttc" id="astructDGtal_1_1functors_1_1IISecondPrincipalCurvature3DFunctor_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1IISecondPrincipalCurvature3DFunctor.html">DGtal::functors::IISecondPrincipalCurvature3DFunctor</a></div></div>
<div class="ttc" id="astructDGtal_1_1functors_1_1Identity_html"><div class="ttname"><a href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1functors_1_1Identity.html">DGtal::functors::Identity</a></div></div>
</div><!-- fragment --></div><!-- contents -->
<!-- HTML footer for doxygen 1.8.11-->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Companion project associated to <a href= "http://liris.cnrs.fr/dgtal/doc/nightly/"> DGtal </a>;
Generated on Mon Dec 23 2024 09:51:47 for DGtalTools by  <a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.9.1
</small></address>
</body>
</html>