- Changed the backend from
arrow
toRSQLight
to increase reliability and improve performance. Some changes to the interface were necessary to implement this and users should read the readme for updated instructions.
- Fixed bug where
create_fish_db
failed when a prior cache was present without a revision file. - Adding
download_method
parameter tocreate_fish_db
to help users download files given their specific limitations
- Add
pkgdown
website - Implement EDI data package version checking and specification withn
create_fish_db
- Remove dependency on
duckdb
and add dependency toarrow
>= v8.0.0 - Fix
remove_unknown_lengths
to ignore 0-counts when finding samples to remove - Change
convert_lengths
function so it no longer collects the full dataset - Add tests to mirror what was previously tested in package
LTMRdata
- Reconfigure internals so internal functions can now read/write database from a specificed cache folder
- Added a
NEWS.md
file to track changes to the package.
- Initialize package and database from EDI data publication