diff --git a/docs/topics/data-metadata-management/index.md b/docs/topics/data-metadata-management/index.md index c583a20..7dd8d6a 100644 --- a/docs/topics/data-metadata-management/index.md +++ b/docs/topics/data-metadata-management/index.md @@ -24,7 +24,7 @@ Welcome! If you are involved in data or metadata standards aspects of establishi ## 1. Learn about data security best practices -Central EGA has a Security Strategy which defines best practices in ensuring data are stored securely. The EGA has helped develop the recommendations outlined the GA4GH Security Technology Infrastructure document, which defines guidelines, best practices, and standards for building and operating an infrastructure that promotes responsible data sharing in accordance with the GA4GH Privacy and Security Policy. +Central EGA has a Security Strategy which defines best practices in ensuring data are stored securely. The EGA has helped develop the recommendations outlined the GA4GH Data Security Infrastructure Policy, which defines guidelines, best practices, and standards for building and operating an infrastructure that promotes responsible data sharing in accordance with the GA4GH Privacy and Security Policy. Summary of best practices recommended for Federated EGA nodes: @@ -37,13 +37,13 @@ Summary of best practices recommended for Federated EGA nodes: ## 2. Explore implemented standards -Central EGA largely adhere to GA4GH standards. Specific standards already implemented are summarised below: +Central EGA largely adhere to GA4GH standards. Specific standards already implemented are summarised below: | Standard | Purpose | Specification Version | Supported Version | Implementation | Publication/Preprint | |:---|:---|:---|:---|:---|:---| -| Beacon | Supports discovery of genomic variants and individuals. | v1.0.1 | v0.3 | Specification, Documentation, Endpoint | N/A | +| Beacon | Supports discovery of genomic variants and individuals. | v1.0.1 | v0.3 | Specification, Documentation, Endpoint | N/A | | Crypt4GH | Enables direct byte-level compatible random access to encrypted genetic data stored in community standards (*e.g.* CRAM, VCF). | v1.0 | v1.0 | Specification, Documentation, Endpoint | DOI | -| Data Use Ontology (DUO) | Allows users to semantically tag datasets with usage restrictions so datasets can be automatically discoverable based on a researcher's authorization level or intended use. | 2021-02-23 | 2021-02-23 | Specification, Documentation, Endpoint | DOI | +| Data Use Ontology (DUO) | Allows users to semantically tag datasets with usage restrictions so datasets can be automatically discoverable based on a researcher's authorization level or intended use. | 2021-02-23 | 2021-02-23 | Specification, Documentation, Endpoint | DOI | | htsget | Enables secure, efficient, and reliable access to sequencing read and variation data including specific genomic regions. | v1.3.0 | v1.0.0 | Specification, Documentation, Endpoint | DOI | | refget | Enables access to reference sequences using an identifier derived from the sequence itself. | v1.2.6 | N/A | Specification, Documentation, Endpoint | DOI | | Researcher IDs (Passports and visas) | Specifies the collection of researchers that may access a dataset at any given time, and the credentials they must supply. | v1.0.1 | v1.0.1 | Specification, Documentation, Endpoint | DOI | @@ -60,7 +60,7 @@ Recommended file formats for: ### Metadata standards The following resources represent EGA and community guidelines for submitted metadata: -- EGA metadata model +- EGA metadata model - General FEGA standards - Introduction to metadata video produced by CSC - Introduction to phenotypic data video produced by CSC @@ -68,7 +68,7 @@ The following resources represent EGA and community guidelines for submitted met - COVID-19 metadata mapping model across COVID-19 studies in Federated EGA (ELIXIR-CONVERGE) - COVID-19 Host Genetics Initiative data dictionary - Phenotypic metadata: the COVID-19 example video produced by CSC - - Building a metadata model for COVID-19 video produced by CSC + - Building a metadata model for COVID-19 video produced by CSC - Recommended ontologies to search for concepts and terms using the **Ontology Look-up Service** (OLS) - **Experimental Factor Ontology** (EFO): ontology record at OLS; EFO GitHub repository. - **Data Use Conditions** (DUO): ontology record at OLS; DUO GitHub repository.