adding pipelines for ri-tools

Author: costero-e

ri-tools/conf/conf.py

@@ -3,18 +3,18 @@
 output_docs_folder='./output_docs/'
 
 #### VCF Conversion config parameters ####
-allele_counts=False
+allele_counts=False # Variable still in test, leave it as False for now.
 reference_genome='GRCh37' # Choose one between NCBI36, GRCh37, GRCh38
 datasetId='test'
 case_level_data=True
-exact_heterozygosity=False
-num_rows=7000000
-verbosity=False
+exact_heterozygosity=True
+num_rows=15000000
+verbosity=False # This variable, if True, will make the program run slower but give logs about all the skipped variants and the reason why.
 
 ### MongoDB parameters ###
 database_host = 'mongo'
 database_port = 27017
 database_user = 'root'
 database_password = 'example'
 database_name = 'beacon'
-database_auth_source = 'admin'
+database_auth_source = 'admin'