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Software to add
Ashley Smith edited this page Dec 15, 2019
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- nbgitpuller https://github.com/jupyterhub/nbgitpuller
- to create links, see http://tljh.jupyter.org/en/latest/howto/content/nbgitpuller.html
- Potentially various widgets https://jupyter.org/widgets
- need to review what options there are.. how to set up.. https://ipywidgets.readthedocs.io/en/latest/examples/Widget%20Basics.html
- appmode https://github.com/oschuett/appmode
- Investigate:
- nteract
- plot.ly
Investigate situation with linters for notebooks
Investigate best option for holoviz setup https://holoviz.org/
- jupyterlab-topbar-extension jupyterlab-system-monitor
- intake
- Packages associated with holoviz
Review them and round up at https://magneticearth.github.io/pages/software.html
good - not installed:
- basemap
- ggplot (or ggplot2, may actually be called plotnine)
- pygal
- Plotly (or Plot.ly)
- geoplotlib
- Gleam
- missingno
- Leather
- folium
- PyROOT (might be require also instaling the ROOT framework)
- PyGSL (might require also getting the tool gsl)
- GMPY2 (might require also getting the tool gmp)
- PyAMG
- PyTrilinos
- paramnormal
- MetroloPy
- Chaco
- PyQwt
- HippoDraw
- Binggles
- gnuplot.py (assumes the tool gnuplot is also installed)
- OpenCV
- Veusz
- PyX
- Dot2Tex
- VPython
- Pandas3D
- SpaceFuncs
- pyqtgraph
- autograd
- AstroPy
- BOTEC
- APLpy
- Healpy
- Pysolar
- pywcgrid
- pyregion
- monte
- PyMC2
- PyBayes
- NIFTY
- SimPy
- EMPy
- scikit-rf
- OSGeo
- SimPEG
- Colour
less important - not installed:
- pytest
- hypothesis
- twine
- wheel
- networkx
- nose
- numpydoc
- Bottleneck
- KryPy
- IDL
- SMOP
- pygame (some use for its visualization libraries)
- Yellowbrick
- graceplot (assumes the tool Grace is also installed)
- pyreport
- CMA
- CVXOPT
- CVXPY
- DEAP
- ECsPy
- Mystic
- PuLP
- PyEvolve
- scikits.optimization
- FUncDesigner
- PyMPI
- Pypar
- Joblib
- jug
- Pyslice
- PyOpenCL
- PyCUDA
- PyCSP
- pyem
- hcluster
- PyPR
- Theano
- Mousai
- CDAT
- seawater
- atmqty
- NZMATH
- mdp
- FiPy
- SfePy
- FEval
- peak-o-mat
Package Version
------------------------ -----------
alabaster 0.7.12
alembic 1.0.8
apexpy 1.0.3
asn1crypto 0.24.0
async-generator 1.10
attrs 19.1.0
Babel 2.7.0
backcall 0.1.0
beautifulsoup4 4.7.1
bleach 3.1.0
blinker 1.4
bokeh 1.0.4
Cartopy 0.17.0
cdflib 0.3.16
certifi 2019.6.16
certipy 0.1.3
cffi 1.12.3
chardet 3.0.4
Click 7.0
cloudpickle 0.8.1
conda 4.6.14
conda-package-handling 1.4.1
cryptography 2.7
cycler 0.10.0
Cython 0.29.7
cytoolz 0.9.0.1
dask 1.1.5
decorator 4.4.0
defusedxml 0.5.0
dill 0.2.9
distributed 1.28.0
docutils 0.15.2
entrypoints 0.3
eoxmagmod 0.9.5
fastcache 1.1.0
ffnet 0.8.4
filelock 3.0.10
future 0.17.1
glob2 0.7
gmdata-webinterface 1.0.8
gmpy2 2.0.8
h5py 2.9.0
heapdict 1.0.0
ibp 0.6.0
idna 2.8
imageio 2.5.0
imagesize 1.1.0
ipykernel 5.1.2
ipympl 0.3.3
ipyparallel 6.2.4
ipython 7.8.0
ipython-genutils 0.2.0
ipywidgets 7.5.1
jedi 0.15.1
Jinja2 2.10.1
jsonschema 3.0.2
jupyter 1.0.0
jupyter-client 5.3.1
jupyter-console 6.0.0
jupyter-core 4.4.0
jupyterhub 1.0.0
jupyterlab 0.35.5
jupyterlab-server 0.2.0
kiwisolver 1.1.0
libarchive-c 2.8
lief 0.9.0
llvmlite 0.27.1
locket 0.2.0
magpysv 1.0
Mako 1.0.7
MarkupSafe 1.1.1
matplotlib 3.1.1
metakernel 0.24.2
mistune 0.8.4
mock 3.0.5
mpmath 1.1.0
msgpack 0.6.1
nbconvert 5.6.0
nbformat 4.4.0
networkx 2.3
notebook 6.0.1
numba 0.42.1
numexpr 2.6.9
numpy 1.17.1
oauthlib 3.0.1
octave-kernel 0.31.0
olefile 0.46
OWSLib 0.18.0
packaging 19.0
pamela 1.0.0
pandas 0.24.2
pandocfilters 1.4.2
parso 0.5.1
partd 0.3.9
patsy 0.5.1
pexpect 4.7.0
pickleshare 0.7.5
Pillow 6.1.0
pip 19.2.3
pkginfo 1.5.0.1
prometheus-client 0.7.1
prompt-toolkit 2.0.9
protobuf 3.7.1
psutil 5.6.2
ptyprocess 0.6.0
pyamps 1.3.1
pycosat 0.6.3
pycparser 2.19
pycryptodome 3.9.0
pycurl 7.43.0.2
pyepsg 0.4.0
Pygments 2.4.2
PyJWT 1.7.1
pykdtree 1.3.1
pyOpenSSL 19.0.0
pyparsing 2.4.2
pyproj 2.3.1
pyrsistent 0.15.4
pyshp 2.1.0
PySocks 1.7.0
python-dateutil 2.8.0
python-editor 1.0.4
pytz 2019.2
PyWavelets 1.0.3
PyYAML 5.1
pyzmq 18.0.2
qtconsole 4.5.5
requests 2.22.0
ruamel-yaml 0.15.71
scikit-image 0.14.2
scikit-learn 0.20.3
scipy 1.3.1
seaborn 0.9.0
Send2Trash 1.5.0
setuptools 41.2.0
Shapely 1.6.4.post2
six 1.12.0
snowballstemmer 1.9.1
sortedcontainers 2.1.0
soupsieve 1.9.1
spacepy 0.2.0
Sphinx 1.8.5
sphinxcontrib-websupport 1.1.2
SQLAlchemy 1.3.3
statsmodels 0.9.0
swarmpyfac 0.1.2
sympy 1.3
tables 3.5.2
tblib 1.3.2
terminado 0.8.2
testpath 0.4.2
toolz 0.9.0
tornado 6.0.3
tqdm 4.35.0
traitlets 4.3.2
urllib3 1.25.3
vincent 0.4.4
viresclient 0.4.3
wcwidth 0.1.7
webencodings 0.5.1
wheel 0.33.6
widgetsnbextension 3.5.1
xarray 0.12.3
xlrd 1.2.0
zict 0.1.4