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Software to add
Ashley Smith edited this page Jan 7, 2020
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16 revisions
- RISE
- nbgitpuller https://github.com/jupyterhub/nbgitpuller
- to create links, see http://tljh.jupyter.org/en/latest/howto/content/nbgitpuller.html
- Potentially various widgets https://jupyter.org/widgets
- need to review what options there are.. how to set up.. https://ipywidgets.readthedocs.io/en/latest/examples/Widget%20Basics.html
- appmode https://github.com/oschuett/appmode
- Investigate:
- nteract
- plot.ly
Investigate situation with linters for notebooks
Investigate best option for holoviz setup https://holoviz.org/installation.html
- jupyterlab-topbar-extension jupyterlab-system-monitor
- intake
- Packages associated with holoviz
- geopandas
available with conda / conda-forge / pyviz channels - which to choose?
bokeh
nodejs
(all available through pip)
chaosmagpy https://github.com/ancklo/ChaosMagPy
pysat https://github.com/pysat/pysat (check that NASA CDF is set up right)
pytplot https://github.com/MAVENSDC/pytplot
ocbpy https://github.com/aburrell/ocbpy
apexpy https://github.com/aburrell/apexpy
aacgmv2 https://github.com/aburrell/aacgmv2
available through conda-forge or pip
heliopy https://github.com/heliopython/heliopy
but need to check what additional optional dependencies to include: http://docs.heliopy.org/en/stable/guide/installing.html
spiceypy https://github.com/AndrewAnnex/SpiceyPy
- Plan to review them and round up at https://magneticearth.github.io/pages/software.html
- See also:
good - not installed:
- basemap
- ggplot (or ggplot2, may actually be called plotnine)
- pygal
- Plotly (or Plot.ly)
- geoplotlib
- Gleam
- missingno
- Leather
- folium
- PyROOT (might be require also instaling the ROOT framework)
- PyGSL (might require also getting the tool gsl)
- GMPY2 (might require also getting the tool gmp)
- PyAMG
- PyTrilinos
- paramnormal
- MetroloPy
- Chaco
- PyQwt
- HippoDraw
- Binggles
- gnuplot.py (assumes the tool gnuplot is also installed)
- OpenCV
- Veusz
- PyX
- Dot2Tex
- VPython
- Pandas3D
- SpaceFuncs
- pyqtgraph
- autograd
- AstroPy
- BOTEC
- APLpy
- Healpy
- Pysolar
- pywcgrid
- pyregion
- monte
- PyMC2
- PyBayes
- NIFTY
- SimPy
- EMPy
- scikit-rf
- OSGeo
- SimPEG
- Colour
less important - not installed:
- pytest
- hypothesis
- twine
- wheel
- networkx
- nose
- numpydoc
- Bottleneck
- KryPy
- IDL
- SMOP
- pygame (some use for its visualization libraries)
- Yellowbrick
- graceplot (assumes the tool Grace is also installed)
- pyreport
- CMA
- CVXOPT
- CVXPY
- DEAP
- ECsPy
- Mystic
- PuLP
- PyEvolve
- scikits.optimization
- FUncDesigner
- PyMPI
- Pypar
- Joblib
- jug
- Pyslice
- PyOpenCL
- PyCUDA
- PyCSP
- pyem
- hcluster
- PyPR
- Theano
- Mousai
- CDAT
- seawater
- atmqty
- NZMATH
- mdp
- FiPy
- SfePy
- FEval
- peak-o-mat
Package Version
------------------------ -----------
alabaster 0.7.12
alembic 1.0.8
apexpy 1.0.3
asn1crypto 0.24.0
async-generator 1.10
attrs 19.1.0
Babel 2.7.0
backcall 0.1.0
beautifulsoup4 4.7.1
bleach 3.1.0
blinker 1.4
bokeh 1.0.4
Cartopy 0.17.0
cdflib 0.3.16
certifi 2019.6.16
certipy 0.1.3
cffi 1.12.3
chardet 3.0.4
Click 7.0
cloudpickle 0.8.1
conda 4.6.14
conda-package-handling 1.4.1
cryptography 2.7
cycler 0.10.0
Cython 0.29.7
cytoolz 0.9.0.1
dask 1.1.5
decorator 4.4.0
defusedxml 0.5.0
dill 0.2.9
distributed 1.28.0
docutils 0.15.2
entrypoints 0.3
eoxmagmod 0.9.5
fastcache 1.1.0
ffnet 0.8.4
filelock 3.0.10
future 0.17.1
glob2 0.7
gmdata-webinterface 1.0.8
gmpy2 2.0.8
h5py 2.9.0
heapdict 1.0.0
ibp 0.6.0
idna 2.8
imageio 2.5.0
imagesize 1.1.0
ipykernel 5.1.2
ipympl 0.3.3
ipyparallel 6.2.4
ipython 7.8.0
ipython-genutils 0.2.0
ipywidgets 7.5.1
jedi 0.15.1
Jinja2 2.10.1
jsonschema 3.0.2
jupyter 1.0.0
jupyter-client 5.3.1
jupyter-console 6.0.0
jupyter-core 4.4.0
jupyterhub 1.0.0
jupyterlab 0.35.5
jupyterlab-server 0.2.0
kiwisolver 1.1.0
libarchive-c 2.8
lief 0.9.0
llvmlite 0.27.1
locket 0.2.0
magpysv 1.0
Mako 1.0.7
MarkupSafe 1.1.1
matplotlib 3.1.1
metakernel 0.24.2
mistune 0.8.4
mock 3.0.5
mpmath 1.1.0
msgpack 0.6.1
nbconvert 5.6.0
nbformat 4.4.0
networkx 2.3
notebook 6.0.1
numba 0.42.1
numexpr 2.6.9
numpy 1.17.1
oauthlib 3.0.1
octave-kernel 0.31.0
olefile 0.46
OWSLib 0.18.0
packaging 19.0
pamela 1.0.0
pandas 0.24.2
pandocfilters 1.4.2
parso 0.5.1
partd 0.3.9
patsy 0.5.1
pexpect 4.7.0
pickleshare 0.7.5
Pillow 6.1.0
pip 19.2.3
pkginfo 1.5.0.1
prometheus-client 0.7.1
prompt-toolkit 2.0.9
protobuf 3.7.1
psutil 5.6.2
ptyprocess 0.6.0
pyamps 1.3.1
pycosat 0.6.3
pycparser 2.19
pycryptodome 3.9.0
pycurl 7.43.0.2
pyepsg 0.4.0
Pygments 2.4.2
PyJWT 1.7.1
pykdtree 1.3.1
pyOpenSSL 19.0.0
pyparsing 2.4.2
pyproj 2.3.1
pyrsistent 0.15.4
pyshp 2.1.0
PySocks 1.7.0
python-dateutil 2.8.0
python-editor 1.0.4
pytz 2019.2
PyWavelets 1.0.3
PyYAML 5.1
pyzmq 18.0.2
qtconsole 4.5.5
requests 2.22.0
ruamel-yaml 0.15.71
scikit-image 0.14.2
scikit-learn 0.20.3
scipy 1.3.1
seaborn 0.9.0
Send2Trash 1.5.0
setuptools 41.2.0
Shapely 1.6.4.post2
six 1.12.0
snowballstemmer 1.9.1
sortedcontainers 2.1.0
soupsieve 1.9.1
spacepy 0.2.0
Sphinx 1.8.5
sphinxcontrib-websupport 1.1.2
SQLAlchemy 1.3.3
statsmodels 0.9.0
swarmpyfac 0.1.2
sympy 1.3
tables 3.5.2
tblib 1.3.2
terminado 0.8.2
testpath 0.4.2
toolz 0.9.0
tornado 6.0.3
tqdm 4.35.0
traitlets 4.3.2
urllib3 1.25.3
vincent 0.4.4
viresclient 0.4.3
wcwidth 0.1.7
webencodings 0.5.1
wheel 0.33.6
widgetsnbextension 3.5.1
xarray 0.12.3
xlrd 1.2.0
zict 0.1.4