Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Get all columns from CADD #481

Open
tkmamidi opened this issue Apr 2, 2022 · 1 comment
Open

Get all columns from CADD #481

tkmamidi opened this issue Apr 2, 2022 · 1 comment
Assignees

Comments

@tkmamidi
Copy link

tkmamidi commented Apr 2, 2022

Hello,
Thank you so much for writing these plugins. They're really helpful and easy to use.

I'm using CADD plugin to annotate variants but it is hardcoded to get only specific columns. Is it possible to re-write to get all columns from input CADD file? I'm using the CADD with all annotations that can be downloaded from here.

Thanks in advance!

@diegomscoelho diegomscoelho self-assigned this Apr 4, 2022
@diegomscoelho
Copy link
Contributor

diegomscoelho commented Apr 4, 2022

Hi @tkmamidi,

Currently we get only get PHRED and RawScore columns from CADD input, generally, CADD has only 6-columns.

We developed a new feature to parse columns based on their absolute name #470 so you will be able to get PHRED and RawScore from any CADD input. This will be avaiable in next release 107 and you can already find on postreleasefix/107 branch.

We will discuss shortly to implement your feature request to get any extra CADD column. I will post here any update related to this.

Thanks for your question!

Best, @diegomscoelho

@nakib103 nakib103 assigned olaaustine and unassigned nakib103 Jan 17, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

4 participants