Skip to content

Update GenBLAST to take 10 best hits #11

@leannehaggerty

Description

@leannehaggerty

Currently the code only takes to top ranked hit


This was because the proteins were likely to be distant from the relative and so it was likely only worth using the top hit, however this removes the potential to find paralogues

We should update this to allow the top 10 ranked hits and then introduce filtering of "bad" alignments in the code that converts the raw genblast output (this is currently written to work with only 1 hit)

def convert_gff_to_gtf(gff_file):

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions