MicrobialForensics

A likelihood ratio-based approach for improved source attribution in microbial forensics

data processing

extract variants from vcf file

extract_variants_from_vcf_file.pl all_data.positions.snp.vcf > data_matrix_snp.txt

calculate pairwise Euclidean disance between samples

calc_eucledian_dist.pl data_matrix_snp.txt > dist_snp.txt

plots