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When updating a database with command below there will be no WARNING or error if the nodenames in genome_id_map does not match the tree_parent_child_relations file. No warnings when creating the kraken database either. I think these genomes and nodes will be skipped?! Cannot find these genomes when i dump the database (flextaxd -db mydatabse.fdb -o flextaxd_out --dump_genome_annotations --dump_genomes)
When updating a database with command below there will be no WARNING or error if the nodenames in genome_id_map does not match the tree_parent_child_relations file. No warnings when creating the kraken database either. I think these genomes and nodes will be skipped?! Cannot find these genomes when i dump the database (
flextaxd -db mydatabse.fdb -o flextaxd_out --dump_genome_annotations --dump_genomes
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