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connectome_hbm2011.lyx
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connectome_hbm2011.lyx
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#LyX 1.6.7 created this file. For more info see http://www.lyx.org/
\lyxformat 345
\begin_document
\begin_header
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\end_header
\begin_body
\begin_layout Title
Connectomes
\end_layout
\begin_layout Section
Saad
\end_layout
\begin_layout Itemize
Micro ~1mm
\end_layout
\begin_layout Itemize
Meso
\end_layout
\begin_layout Itemize
Macro
\end_layout
\begin_deeper
\begin_layout Standard
Rouiller 1998 tracer studies
\end_layout
\begin_layout Standard
Catani Thiebaut 2009
\end_layout
\begin_layout Standard
Beckmann 2009
\end_layout
\end_deeper
\begin_layout Itemize
Histological differences
\end_layout
\begin_deeper
\begin_layout Standard
Ongur and Price, J.Comp.
Neurol.
2003
\end_layout
\begin_layout Standard
Mackey Petrides
\end_layout
\begin_layout Standard
Vogt 2009
\end_layout
\end_deeper
\begin_layout Itemize
Cortical areas
\end_layout
\begin_deeper
\begin_layout Itemize
Andrews, Halpern J.Neurosc 1997
\end_layout
\begin_layout Itemize
Amunts, Zilles, Fischl
\end_layout
\end_deeper
\begin_layout Itemize
histological atlases not directly useful
\end_layout
\begin_layout Standard
In vivo parcellation of cortex ICA, Jbabdi In prepation
\end_layout
\begin_layout Itemize
Modelling errors
\end_layout
\begin_deeper
\begin_layout Itemize
voxel level
\end_layout
\begin_layout Itemize
Jumping between tracks
\end_layout
\end_deeper
\begin_layout Itemize
Measurement errors
\end_layout
\begin_layout Standard
Lerch NeuroImage 2006 Cortical thickness
\end_layout
\begin_layout Itemize
Tension Theory (van Essen)
\end_layout
\begin_layout Itemize
Vincent Nature 2007
\end_layout
\begin_layout Section
Vince Calhoun
\end_layout
\begin_layout Standard
Connectome Sporns PLoS 2005
\end_layout
\begin_layout Itemize
Functional Connectivity Biswal et al.
MRM 1995
\end_layout
\begin_layout Itemize
Default mode Raichle 2010
\end_layout
\begin_layout Itemize
Shannon 2006
\end_layout
\begin_layout Itemize
ICA used for multiple networks Allen Frontiers in Human Neuroscience 2011
\end_layout
\begin_layout Itemize
Calhoun 2001
\end_layout
\begin_layout Itemize
Telesford 2010
\end_layout
\begin_layout Itemize
Jafri 2008
\end_layout
\begin_layout Itemize
Calhoun 2008, 2006, 2009
\end_layout
\begin_layout Itemize
Smith 2009
\end_layout
\begin_layout Itemize
Eichele 2008 (The not-so default mode of brain function)
\end_layout
\begin_layout Itemize
Garrity 2007 Default mode & Schizophrenia
\end_layout
\begin_layout Itemize
Wu, Calhoun EEG/fMRI 2010
\end_layout
\begin_layout Itemize
Glahm Heritability
\end_layout
\begin_layout Section
Robert Oostenveld
\end_layout
\begin_layout Itemize
EEG/MEG
\end_layout
\begin_deeper
\begin_layout Itemize
dipole fitting
\end_layout
\begin_layout Itemize
minimum norm
\end_layout
\begin_layout Itemize
spatial filtering - beamformer
\end_layout
\begin_layout Itemize
blind source separation - ICA
\end_layout
\end_deeper
\begin_layout Itemize
Coherence
\end_layout
\begin_deeper
\begin_layout Itemize
consistency of the phase
\end_layout
\begin_layout Itemize
consistency of the amplitude
\end_layout
\begin_layout Itemize
pearson correlation in the frequency domain
\end_layout
\end_deeper
\begin_layout Itemize
Granger causality
\end_layout
\begin_layout Section
Wald
\end_layout
\begin_layout Itemize
SNR in high b-values is poor
\end_layout
\begin_layout Itemize
Stronger gradients give us high b with shorter TE
\end_layout
\begin_layout Itemize
Julien Cohen
\end_layout
\begin_layout Itemize
300 mT/m human gradients
\end_layout
\begin_layout Itemize
Siemens Healthcare Erlangen
\end_layout
\begin_layout Itemize
Heat removal favors whole-body design
\end_layout
\begin_layout Itemize
Limit patient bore 56 cm
\end_layout
\begin_layout Itemize
12x2 megaWatt use as powerful engine as possible
\end_layout
\begin_layout Itemize
Connectome Scanner Rocks!!
\end_layout
\begin_layout Itemize
Simultaneous multi-slice
\end_layout
\begin_layout Itemize
Setsompop ISMRM 2010
\end_layout
\begin_layout Itemize
DSI in 14 minutes
\end_layout
\begin_layout Itemize
Paul Thomson multi-tensors
\end_layout
\begin_layout Itemize
Cortical Diffusion radiality MacNab
\end_layout
\begin_layout Itemize
Fishl Unsupervised atlas
\end_layout
\begin_layout Section
Randy McIntosh
\end_layout
\begin_layout Itemize
Functional Connectivity
\end_layout
\begin_layout Itemize
Effective Connectivity
\end_layout
\begin_deeper
\begin_layout Itemize
Granger
\end_layout
\begin_layout Itemize
DCM
\end_layout
\end_deeper
\begin_layout Itemize
Voxel-wise Methods
\end_layout
\begin_deeper
\begin_layout Itemize
Horwitz 1984 PET
\end_layout
\begin_layout Itemize
Bisval 1995 Resting state
\end_layout
\begin_layout Itemize
Linear regression
\end_layout
\begin_deeper
\begin_layout Itemize
Friston 1997
\end_layout
\end_deeper
\begin_layout Itemize
Partial least squares
\end_layout
\begin_layout Itemize
Melodic ICA
\end_layout
\end_deeper
\begin_layout Itemize
www.sfn.org some material there
\end_layout
\begin_layout Section
Steve Petersen
\end_layout
\begin_layout Itemize
graph theory
\end_layout
\begin_layout Itemize
netsci
\end_layout
\begin_layout Itemize
spring embedded graph
\end_layout
\begin_layout Itemize
community detection (infomap)
\end_layout
\begin_layout Itemize
local efficiency
\end_layout
\begin_layout Section
Mark Woolrich
\end_layout
\begin_layout Itemize
Craddock HBM 2011
\end_layout
\begin_layout Itemize
Cohen Neuroimage 2009
\end_layout
\begin_layout Itemize
Beckmann
\end_layout
\begin_layout Itemize
pairwise - correlation, mi, coherence
\end_layout
\begin_layout Itemize
semi global - partial correlations , icov
\end_layout
\begin_layout Itemize
global - multivariate AR (Granger), DCMs
\end_layout
\begin_layout Itemize
Smith 2011 - correlation good at edge detection - granger bad - directionality
hard to estimate
\end_layout
\begin_layout Itemize
Li 2011 stochastic DCM
\end_layout
\begin_layout Itemize
Friston Neuroimage 2011
\end_layout
\begin_layout Itemize
Hilbert envelope MEG - Brookses 2011
\end_layout
\begin_layout Itemize
Stephan 2007
\end_layout
\begin_layout Section
Gael Varoquaux
\end_layout
\begin_layout Itemize
adjacency matrix
\end_layout
\begin_layout Itemize
scaled partial correlation
\end_layout
\begin_layout Itemize
sparce inverse covariance Varoquaux NIPS 2010 - poster 662
\end_layout
\begin_layout Itemize
z-transform to make them gaussians
\end_layout
\begin_layout Itemize
SEM Marrelec 2007
\end_layout
\begin_layout Itemize
DCM
\end_layout
\begin_layout Itemize
PClingam Hoyer 2008
\end_layout
\begin_layout Section
Spinal Cord
\end_layout
\begin_layout Subsection
Claudia Wheeler - Kingshott
\end_layout
\begin_layout List
\labelwidthstring 00.00.0000
Axonal Diameter - AxCaliber
\end_layout
\begin_layout Standard
Active Imaging Daniel Alexander
\end_layout
\begin_layout Standard
\end_layout
\end_body
\end_document