added diamond config

Author: joelvbernier

DAC/alpha_zirconium_axial_multi/include/diamond_config.yml

@@ -0,0 +1,100 @@
+analysis_name: results_diamond_state_0000  # defaults to analysis
+
+# working directory defaults to current working directory
+# all relative paths specified herein are assumed to be in the working_dir
+# any files not in working_dir should be specified with an absolute path
+#
+# working_dir:
+
+# "all", "half", or -1 means all but one, defaults to -1
+multiprocessing: -1
+
+material:
+  definitions: materials.h5
+  active: diamond
+  dmin: 0.5 # defaults to 1.0 angstrom
+  tth_width: 0.2 # defaults to 0.25 degrees
+  # min_sfac_ratio: 0.05 # min percentage of max |F|^2 to exclude; default None
+
+image_series:
+  format: frame-cache
+  data:
+    - file: ../imageseries/LT1_Ne_zr001_00000-fc_GE2.npz
+      args: {}
+      panel: GE2  # must match detector key
+
+instrument: GE2_APS_1-ID-C_20110713.hexrd
+
+find_orientations:
+  orientation_maps:
+    # A file name must be specified. If it doesn't exist, one will be created
+    file: null
+
+    threshold: null
+    bin_frames: 1 # defaults to 1
+
+    # "all", or a list of hkl orders used to find orientations
+    # defaults to all orders listed in the material definition
+    active_hkls: [1,2,4,5,6,9]
+
+  # either search full quaternion grid, or seed search based on sparse
+  # orientation maps.  For input search space:
+  #
+  # use_quaternion_grid: some/file/name
+  #
+  # otherwise defaults to seeded search:
+  seed_search: # this section is ignored if use_quaternion_grid is defined
+    hkl_seeds: [0,1,2] # hkls ids to use, must be defined for seeded search
+    fiber_step: 0.5 # degrees, defaults to ome tolerance
+    # Method selection:
+    #   Now 3 choices: label (the original), 'blob_dog', and 'blob_log'
+    #   Each has its own parameter names, examples below.
+    #
+    method:
+      label:
+        filter_radius: 0
+        threshold: 250 # defaults to 1
+
+  # this is the on-map threshold using in the scoring
+  # defaults to 1
+  threshold: 25
+
+  omega:
+    tolerance: 1.0  # in degrees, defaults to 2x ome step
+
+    # specify the branch cut, in degrees. The range must be 360 degrees.
+    # defaults to full 360 starting at the first omega value in imageseries.
+    # !!! THIS OPTION IS DEPRECATED.
+    # period: [0, 360]
+
+  eta:
+    tolerance: 1.0  # in degrees, defaults to 2x ome step
+    mask: 5  # degrees, mask angles close to ome rotation axis, defaults to 5
+
+  clustering:
+    # algorithm choices are
+    #   sph-dbscan
+    #   ort-dbscn
+    #   dbscan <default>
+    #   fclusterdata; this is a fallback and won't work for large problems
+    radius: 1.0
+    completeness: 0.75 # completeness threshold
+    algorithm: dbscan
+
+fit_grains:
+  do_fit: true # if false, extracts grains but doesn't fit. defaults to true
+
+  # estimate: null
+
+  npdiv: 2 # number of polar pixel grid subdivisions, defaults to 2
+
+  threshold: 5
+
+  tolerance:
+    tth: [0.2, 0.1] # tolerance lists must be identical length
+    eta: [5.0, 5.0]
+    omega: [5.0, 5.0]
+
+  # refit: [1, 1]
+
+  tth_max: 17.5