renamed the package to vizIncidence

Author: thibautjombart

plotIncidence/R/doc.R

@@ -6,11 +6,12 @@
 #' @section Available functions include:
 #'  \itemize{
 #'  \item{plotIncidence}{Plot incidence time series using histograms}
+#'  \item{mapIncidence}{Visualise incidence in space and time using animations}
 #' }
 ##
 #'
 #' @docType package
-#' @name plotIncidence
+#' @name vizIncidence
 NULL
 
 
@@ -34,7 +35,7 @@ NULL
 
 #' #' #' Zombie outbreak dataset
 #'
-#' This is a dataset simulating an outbreak with geo-localisation of the cases (6 localities)  
+#' This is a dataset simulating an outbreak with geo-localisation of the cases (6 localities)
 #'
 #' \itemize{
 #'   \item x.coord a vector of x coordinates

plotIncidence/man/plotIncidence.Rd

@@ -1,10 +1,8 @@
 % Generated by roxygen2 (4.1.0): do not edit by hand
-% Please edit documentation in R/doc.R, R/plotIncidence.R
-\docType{package}
+% Please edit documentation in R/plotIncidence.R
 \name{plotIncidence}
 \alias{plotIncidence}
-\alias{plotIncidence-package}
-\title{plotIncidence: A package for plotting incidence data.}
+\title{Plot incidence time series using histograms}
 \usage{
 plotIncidence(x, dates, bin = 7, fill.by = NULL, split.by = NULL,
   shade.by = NULL, start.at = NULL, stop.at = NULL, xlab = NULL,
@@ -41,16 +39,8 @@ plotIncidence(x, dates, bin = 7, fill.by = NULL, split.by = NULL,
 \item{col.pal}{an integer between 1 and 8 indicating a color palette to be used; if NULL, the default color palette of ggplot2 is used}
 }
 \description{
-This package provides functions for computing and plotting incidence data from outbreak line lists.
-
 This function provides advanced plotting facilities for incidence time series using ggplot2
 }
-\section{Available functions include}{
-
- \itemize{
- \item{plotIncidence}{Plot incidence time series using histograms}
-}
-}
 \examples{
 data("toy")
 head(toy)

plotIncidence/man/vizIncidence.Rd

@@ -0,0 +1,18 @@
+% Generated by roxygen2 (4.1.0): do not edit by hand
+% Please edit documentation in R/doc.R
+\docType{package}
+\name{vizIncidence}
+\alias{vizIncidence}
+\alias{vizIncidence-package}
+\title{plotIncidence: A package for plotting incidence data.}
+\description{
+This package provides functions for computing and plotting incidence data from outbreak line lists.
+}
+\section{Available functions include}{
+
+ \itemize{
+ \item{plotIncidence}{Plot incidence time series using histograms}
+ \item{mapIncidence}{Visualise incidence in space and time using animations}
+}
+}
+