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Message from James Eddy:
I was able to download and validate your test submission for the 'pcawg-sanger-variant-caller' workflow, so we're almost ready to go! However, I need your help with what should (hopefully) be a small fix:
Please update your checker tool so that it outputs results.json
and log.txt
instead of checker_report.txt
and checker_report.log
. The script that automatically validates submissions for
all workflows expects these filenames. Also note that results.json
should be a valid JSON file — e.g.
{"overall": true, "steps": {"workflow_log": true, "germline.sv": true, "sv.qc-json": true, "somatic.sv": true}}
(if you exclude the "steps" field, that's fine)
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