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KarrLab/wc_model_gen
Reconcieve of wc-model-gen as workflow?

  • jonrkarr
  • Opened 
    on Oct 8, 2019
  • #17

KarrLab/wc_model_gen
Fix reaction modifier when degradose degrades

  • szb37
  • Opened 
    on Oct 1, 2018
  • #16

KarrLab/wc_model_gen
Implement tests that check model dynamics

  • szb37
  • Opened 
    on Sep 25, 2018
  • #15

KarrLab/wc_model_gen
Circular dependencies between prokaryote.MetabolismSubmodelGenerator and prokaryote.InitalizeModel

As currently implemented, if the kb defines any reactions or rate laws that use metabolites, then InitalizeModel should run gen_kb_reactions() and gen_kb_rate_laws() to build the corresponding lang reactions ...
  • artgoldberg
  • 1
  • Opened 
    on Sep 23, 2018
  • #14

KarrLab/wc_model_gen
Investigate protein degradation submodel OBO error

  • szb37
  • Opened 
    on Sep 20, 2018
  • #13

KarrLab/wc_model_gen
Investigate issue of assiging same tRNAs to two codons for non-reduced genetic codes (probabilistic error)

  • szb37
  • Opened 
    on Sep 18, 2018
  • #12

KarrLab/wc_model_gen
Automatically add repo metadata even if not in directory

  • szb37
  • Opened 
    on Sep 11, 2018
  • #11

KarrLab/wc_model_gen
include option for minimal genetic code

have option to generate models with 5 trnas to be able to produce truly small models
  • szb37
  • Opened 
    on Sep 10, 2018
  • #10

KarrLab/wc_model_gen
calculate mol weight of complexes

  • szb37
  • Opened 
    on Sep 5, 2018
  • #9

KarrLab/wc_model_gen
rate law gen: maximise inheritence

Some of the code with respect to rate law generation should moved into prokaryote base class to better use inheritance
  • szb37
  • Opened 
    on Sep 5, 2018
  • #8
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