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parallelization params to run-frog #82

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mihai-sysbio opened this issue Aug 23, 2023 · 1 comment
Open

parallelization params to run-frog #82

mihai-sysbio opened this issue Aug 23, 2023 · 1 comment
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🚀 performance 🌟 wishlist, feature

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@mihai-sysbio
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mihai-sysbio commented Aug 23, 2023

While trying to run fbcmodeltests-run-frog via Docker on Human-GEM, it took way too many hours to compute with the default settings, so I tried for a little to manually add workers and failed. It would be great to allow passing of parallelization params to run-frog, since the underlying function FROG.generate_report already has support for it.

@exaexa
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exaexa commented Aug 23, 2023

True, we omitted the parameter so far because the script was meant to be a completely simple wrapper... will add asap.

@exaexa exaexa self-assigned this Aug 23, 2023
@exaexa exaexa added 🌟 wishlist, feature 🚀 performance labels Aug 23, 2023
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