.gitignore

# bioinfo files
*.fastq
*.fastq.gz
*.fq
*.fq.gz
.fasta
.fa
.fasta.gz
.fa.gz
*.sam
*.bam
*.gtf
*.gff

# STAR files
*.out.tab
_STARtmp/

# vscode
.vscode/

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Jupyter Notebook
.ipynb_checkpoints

# pyenv
.python-version

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# mkdocs documentation
/site

# mypy
.mypy_cache/

# OS generated files
.DS_Store
.DS_Store?
.Spotlight-V100
.Trashes
Icon?
ehthumbs.db
Thumbs.db

### R files
# History files
.Rhistory
.Rapp.history

# Session Data files
.RData
.RDataTmp

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

# pkgdown site
docs/

# translation temp files
po/*~

# RStudio Connect folder
rsconnect/