0.0.5

Release Notes

Major changes: This release reverts to the 2.5 version selection criteria, and it also switches the ICA implementation from mdp to sklearn. It is also includes a major overhaul of the documentation.

With thanks to @frodeaa, @RupeshGoud, and @jbteves for contributrions !

Changes

• [DOC] Rearrange badges in README (#118) @tsalo
• [ENH] Linting, update imports (#4) @emdupre
• [FIX] Add quiet and debug options to t2smap (#123) @emdupre
• [DOC] Add Python version info (#126) @tsalo
• [FIX] Accept non-NIFTI files without complaining (#128) @rmarkello
• [FIX] Remove nifti requirement in selcomps() (#130) @rmarkello
• Inital commit of tedana package (#1) @emdupre
• [DOC] Update multi-echo.rst (#138) @RupeshGoud
• [FIX] Logging in tedana and t2smap (#143) @frodeaa
• [ENH] Track PCA and ICA component selection decisions (#122) @tsalo
• [DOC] Improve documentation for pipeline (#133) @tsalo
• Documentation update for installation and environments in miniconda (#142) @jbteves
• [DOC] Add Support page (#150) @tsalo
• [ENH] Rename modules (#136) @frodeaa
• [DOC] Update documentation for interacting with other pipelines (#134) @emdupre
• Merge in @rmarkello PR (#19) @emdupre
• [TST] Support Python 3.5 (#154) @tsalo
• [DOC] Request for Comments: Roadmap and Contributing (#151) @emdupre
• [ENH] update ICA to sklearn from mdp (#44) @emdupre
• [DOC] RST formatting fixes for roadmap, contributing (#157) @emdupre
• [ENH] Switch to Selcomps 2.5 (#119) @emdupre
• [FIX] Loop through volumes in FIT method (#158) @tsalo

0.0.5-rc2

Release Notes

Update licensing for zenodo integration

Changes

• [FIX] Update license and license fields (#117)

0.0.5-rc1

Release Notes

To patch for the zenodo release

Changes

• [FIX] Lint zenodo.json (#116)

0.0.4

Release Notes

With thanks to @chrisfilo and @oesteban for suggestions !

Changes

• [FIX] add extensions in fnames for filewrite (#92)
• [ENH, FIX] Add wavelet denoising and fix t2smap workflow (#90)
• [DOC] Better commenting for component selection algorithm in selcomps (#91)
• [DOC, REF] Add files generated to function docstrings (#94)
• [FIX] Remove hardcoded numbers of echoes. (#95)
• [DOC] Add resources to RTD site (#99)
• [REF] Merge CLI into workflows (#100)
• [TST] Update testing environment (#103)
• [DOC] Update docstring for fixed_seed to ref None option (#104)
• [ENH] Add mask argument to t2smap, tedana (#108)
• [DOC, REF] Refactor select_comps and add shape checks to several functions (#105)
• [DOC] Streamline release process, add checklist to RTD (#109)
• [FIX] Drop gifti support (#114)
• [FIX] Explicitly strip extensions (#115)

0.0.3

Release Notes

Release including hot fix for JSON serialize error.

Changes

[FIX] Hot fix for JSON serialize error

0.0.2

Release Notes

This release improves documentation and handling of individually supplied echos.

Changes

[FIX] Add fname to TED dirname
[FIX] Improve gii file handling
[FIX] Fixes path handling and reference image errors
[DOC] Add discussion of gitter room
[DOC] Remove docker reference in contributing
[DOC] Remove installation RTD

Initial tedana release

The first release for tedana. Building off scripts originally developed in the ME-ICA pipeline, tedana is a python package for performing TE-Dependent Analysis on multi-echo fMRI data.

doi: 10.5281/zenodo.1250562