From fbd26d4078b76ed3092289b2281896a27c46f021 Mon Sep 17 00:00:00 2001 From: ChristopherSpelt Date: Thu, 31 Oct 2024 15:02:40 +0100 Subject: [PATCH] Refactor existing endpoints and create endpoints --- .DS_Store | Bin 8196 -> 0 bytes .gitignore | 2 + .pre-commit-config.yaml | 2 + poetry.lock | 843 ++++++++++++----------- pyproject.toml | 12 +- task_registry/api/main.py | 5 +- task_registry/api/routes/instruments.py | 35 +- task_registry/api/routes/measures.py | 42 ++ task_registry/api/routes/requirements.py | 42 ++ task_registry/api/routes/urns.py | 31 - task_registry/core/config.py | 9 +- task_registry/data.py | 124 ++-- task_registry/lifespan.py | 13 +- task_registry/server.py | 6 +- 14 files changed, 661 insertions(+), 505 deletions(-) delete mode 100644 .DS_Store create mode 100644 task_registry/api/routes/measures.py create mode 100644 task_registry/api/routes/requirements.py delete mode 100644 task_registry/api/routes/urns.py diff --git a/.DS_Store b/.DS_Store deleted file mode 100644 index 626bd0a317f4efea4c112056fa5673a391689793..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 8196 zcmeHM&2G~`5T5N{970P#AaX&n#I=M_P^F4XNE1*cXr(3vAwVH%LhIJGgOfChs-m3X z9r_Afc@o}*6MQr4R<_e14i&1@-D-E%>-lzOzn!%+E)l6xzx9YHM?@AX%WMYCIfd_Y z9V=7e$X!SUJW-ntQ9bHWeoWg87zPXjh5^HXVZbnO85qDjn~OE!y|3?@)-YfgxRMO; z^T9@CSq$Y!OL=slkrV)O2E$U&M;;&;JCwyxjM7KCsowaw1xr0z&Hb(yDw0Kwvn^fWBL0Yb;&1h&GomNuHS?n zAFXGo`QK8|Bf3Sav_WO60KGxa(em{=Mz+wa;XA+qwGwlDPt1{lbsu^iv|ad+ry;J~ zI7;11pl*bgYP3mfRD!)4475CW*aM;u z5A~OhZX7kWlR%~DCHz_iL+ezfN?cp`Jc;m`#k>vtv5hwEpu#U$tz)Fkw&QqSms*J6 zE%B=X&A!Z#@J@J$+RF&*ZLv25bFOA3ZbjA$p9f0f3ShV3p#2C(SL?gDh zYk4K|K)R#!i&qI$RejleqpBe{O ze1e7vB-W~;$eWXqSV;#y?!;%17>mv@iy7oxCcTtZM>QAZ+bH{|z5Cm#=4ahWWQDji z#V~Ne3{30!a-9EHCV&6GV5??2!+>GnGBKcL%GGiS9-aQ!NIJ*4wvGA`l?&^Qv=j&$ pNyi~29fv&ohavhlR2fqY5EnC9v+@CQGBx6=Rs diff --git a/.gitignore b/.gitignore index 388271b..aad649e 100644 --- a/.gitignore +++ b/.gitignore @@ -30,3 +30,5 @@ index.json # Logging files *.log + +.DS_Store diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 98a8852..03c8f24 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -17,7 +17,9 @@ repos: rev: v0.7.1 hooks: - id: ruff + args: [--config, pyproject.toml] - id: ruff-format + args: [--config, pyproject.toml] - repo: local hooks: - id: validate-schema diff --git a/poetry.lock b/poetry.lock index c06d61a..52beffb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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Python :: 3", + "Topic :: Scientific/Engineering :: Artificial Intelligence", + "Typing :: Typed" +] packages = [ { include = "task_registry" } ] @@ -48,7 +56,7 @@ types-pyyaml = "^6.0.12.20240724" # Ruff settings: https://docs.astral.sh/ruff/configuration/ [tool.ruff] line-length = 120 -target-version = "py311" +target-version = "py312" src = ["task_registry", "tests", "script"] include = ['script/validate'] diff --git a/task_registry/api/main.py b/task_registry/api/main.py index 5bebdc7..4ffc9f7 100644 --- a/task_registry/api/main.py +++ b/task_registry/api/main.py @@ -1,7 +1,8 @@ from fastapi import APIRouter -from task_registry.api.routes import health, instruments, urns +from task_registry.api.routes import health, instruments, measures, requirements api_router = APIRouter() api_router.include_router(health.router, prefix="/health", tags=["health"]) api_router.include_router(instruments.router, prefix="/instruments", tags=["instruments"]) -api_router.include_router(urns.router, prefix="/urns", tags=["urns"]) +api_router.include_router(measures.router, prefix="/measures", tags=["measures"]) +api_router.include_router(requirements.router, prefix="/requirements", tags=["requirements"]) diff --git a/task_registry/api/routes/instruments.py b/task_registry/api/routes/instruments.py index 989c09e..f399c0c 100644 --- a/task_registry/api/routes/instruments.py +++ b/task_registry/api/routes/instruments.py @@ -1,8 +1,10 @@ import logging -from fastapi import APIRouter +from fastapi import APIRouter, HTTPException +from fastapi.encoders import jsonable_encoder from fastapi.responses import JSONResponse -from task_registry.lifespan import CACHED_DATA +from task_registry.data import Tasks +from task_registry.lifespan import CACHED_REGISTRY router = APIRouter() @@ -11,9 +13,30 @@ @router.get( "/", - summary="Overview of all the Instruments in the Task Registry", - description="This endpoint returns a JSON with all the Instruments in the Task Registry.", + summary="Overview of all the instruments in the task registry.", + description="This endpoint returns a JSON with all the instruments in the task registry.", responses={200: {"description": "JSON with all the instruments."}}, ) -async def get_root() -> JSONResponse: - return JSONResponse(content=CACHED_DATA["index"]) +async def get_instruments() -> JSONResponse: + encoded_content = jsonable_encoder(CACHED_REGISTRY.get_tasks_index(Tasks.INSTRUMENTS)) + return JSONResponse(content=encoded_content) + + +# Optional parameter 'version' is included, but not used. In a new ticket +# versioning of instruments should be handled. +@router.get( + "/urn/{urn}", + summary="Get the contents of the specific instrument which has given URN.", + description="This endpoint returns a JSON with the contents of a specific instrument identified by URN" + " and version.", + responses={ + 200: {"description": "JSON with the specific contents of the instrument."}, + 400: {"description": "The URN does not exist or is not valid."}, + }, +) +async def get_instrument(urn: str, version: str = "latest") -> JSONResponse: + try: + content = CACHED_REGISTRY.get_task(urn, Tasks.INSTRUMENTS) + return JSONResponse(content=content) + except KeyError as err: + raise HTTPException(status_code=400, detail=f"invalid urn: {urn}") from err diff --git a/task_registry/api/routes/measures.py b/task_registry/api/routes/measures.py new file mode 100644 index 0000000..f739b0a --- /dev/null +++ b/task_registry/api/routes/measures.py @@ -0,0 +1,42 @@ +import logging + +from fastapi import APIRouter, HTTPException +from fastapi.encoders import jsonable_encoder +from fastapi.responses import JSONResponse +from task_registry.data import Tasks +from task_registry.lifespan import CACHED_REGISTRY + +router = APIRouter() + +logger = logging.getLogger(__name__) + + +@router.get( + "/", + summary="Overview of all the measures in the task registry", + description="This endpoint returns a JSON with all the measures in the task registry.", + responses={200: {"description": "JSON with all the measures."}}, +) +async def get_measures() -> JSONResponse: + encoded_content = jsonable_encoder(CACHED_REGISTRY.get_tasks_index(Tasks.MEASURES)) + return JSONResponse(content=encoded_content) + + +# Optional parameter 'version' is included, but not used. In a new ticket +# versioning of measures should be handled. +@router.get( + "/urn/{urn}", + summary="Get the contents of the specific measure by URN", + description="This endpoint returns a JSON with the contents of a specific measure identified by URN" + " and version.", + responses={ + 200: {"description": "JSON with the specific contents of the measure."}, + 400: {"description": "The URN does not exist or is not valid."}, + }, +) +async def get_measure(urn: str, version: str = "latest") -> JSONResponse: + try: + content = CACHED_REGISTRY.get_task(urn, Tasks.MEASURES) + return JSONResponse(content=content) + except KeyError as err: + raise HTTPException(status_code=400, detail=f"invalid urn: {urn}") from err diff --git a/task_registry/api/routes/requirements.py b/task_registry/api/routes/requirements.py new file mode 100644 index 0000000..6554ad3 --- /dev/null +++ b/task_registry/api/routes/requirements.py @@ -0,0 +1,42 @@ +import logging + +from fastapi import APIRouter, HTTPException +from fastapi.encoders import jsonable_encoder +from fastapi.responses import JSONResponse +from task_registry.data import Tasks +from task_registry.lifespan import CACHED_REGISTRY + +router = APIRouter() + +logger = logging.getLogger(__name__) + + +@router.get( + "/", + summary="Overview of all the requirements in the task registry.", + description="This endpoint returns a JSON with all the requirements in the task registry.", + responses={200: {"description": "JSON with all the requirements."}}, +) +async def get_requirements() -> JSONResponse: + encoded_content = jsonable_encoder(CACHED_REGISTRY.get_tasks_index(Tasks.REQUIREMENTS)) + return JSONResponse(content=encoded_content) + + +# Optional parameter 'version' is included, but not used. In a new ticket +# versioning of requirements should be handled. +@router.get( + "/urn/{urn}", + summary="Get the contents of the specific instrument which has given URN.", + description="This endpoint returns a JSON with the contents of a specific instrument identified by URN" + " and version.", + responses={ + 200: {"description": "JSON with the specific contents of the instrument."}, + 400: {"description": "The URN does not exist or is not valid."}, + }, +) +async def get_requirement(urn: str, version: str = "latest") -> JSONResponse: + try: + content = CACHED_REGISTRY.get_task(urn, Tasks.REQUIREMENTS) + return JSONResponse(content=content) + except KeyError as err: + raise HTTPException(status_code=400, detail=f"invalid urn: {urn}") from err diff --git a/task_registry/api/routes/urns.py b/task_registry/api/routes/urns.py deleted file mode 100644 index 83d61de..0000000 --- a/task_registry/api/routes/urns.py +++ /dev/null @@ -1,31 +0,0 @@ -import logging - -from fastapi import APIRouter, Depends, HTTPException -from fastapi.responses import JSONResponse -from task_registry.lifespan import CACHED_DATA - -router = APIRouter() - -logger = logging.getLogger(__name__) - - -def _validate_urn(urn: str) -> str: - if urn not in CACHED_DATA["urn_mapper"]: - raise HTTPException(status_code=400, detail=f"Invalid urn: {urn}") - return urn - - -# Optional parameter 'version' is included, but not used. In a new ticket -# versioning of instruments should be handled. -@router.get( - "/", - summary="Get the contents of the specific Instrument by URN", - description="This endpoint returns a JSON with the contents of a specific Instrument identified by URN" - " and version.", - responses={ - 200: {"description": "JSON with the specific contents of the Instrument."}, - 400: {"description": "The URN does not exist or is not valid."}, - }, -) -async def get_instrument(urn: str = Depends(_validate_urn), version: str = "latest") -> JSONResponse: - return JSONResponse(content=CACHED_DATA["urn_mapper"][urn]) diff --git a/task_registry/core/config.py b/task_registry/core/config.py index f2bbf8a..c4290f8 100644 --- a/task_registry/core/config.py +++ b/task_registry/core/config.py @@ -10,9 +10,14 @@ # Self type is not available in Python 3.10 so create our own with TypeVar SelfSettings = TypeVar("SelfSettings", bound="Settings") -PROJECT_NAME: str = "TR" -PROJECT_DESCRIPTION: str = "Task Registry" +PROJECT_NAME: str = "Task Registry" +PROJECT_SUMMARY: str = """ +API service for the task registry. This API can be used to retrieve +measures, requirements and instruments in this registry. +""" VERSION: str = "0.1.0" # replace in CI/CD pipeline +LICENSE_NAME: str = "EUPL-1.2 license" +LICENSE_URL: str = "https://eupl.eu/1.2/en/" class Settings(BaseSettings): diff --git a/task_registry/data.py b/task_registry/data.py index d5e0474..fbf7fb8 100644 --- a/task_registry/data.py +++ b/task_registry/data.py @@ -1,67 +1,103 @@ import logging import os +from enum import StrEnum from pathlib import Path from typing import Any import yaml +from pydantic import BaseModel logger = logging.getLogger(__name__) -def get_file_size(file_path: str) -> int: - return os.path.getsize(file_path) # pragma: no cover +class Tasks(StrEnum): + INSTRUMENTS = "instruments" + REQUIREMENTS = "requirements" + MEASURES = "measures" -def create_urn_mappper(entries: list[dict[str, Any]]) -> dict[str, Any]: - urn_mapper: dict[str, Any] = {} - for instrument in entries: - path = Path(instrument["path"]) - try: - with open(str(path)) as f: - urn_mapper[instrument["urn"]] = yaml.safe_load(f) - except FileNotFoundError: - logger.exception(f"Instrument file with path {path} not found.") # pragma: no cover +class Link(BaseModel): + self: str - except yaml.YAMLError: - logger.exception(f"Instrument file with path {path} could not be parsed.") # pragma: no cover - return urn_mapper +class FileInfo(BaseModel): + type: str + size: int + name: str + path: str + urn: str + download_url: str + _links: Link + + +class Index(BaseModel): + type: str + size: int + name: str + path: str + download_url: str + _links: Link + entries: list[FileInfo] + + +class CachedRegistry: + def __init__(self) -> None: + self.index_cache: dict[Tasks, Index] = {} + self.tasks_cache: dict[tuple[str, Tasks], Any] = {} + + def add_tasks(self, tasks: Tasks) -> None: + index = generate_index(tasks) + self.index_cache[tasks] = index + + for task in index.entries: + path = Path(task.path) + try: + with open(str(path)) as f: + self.tasks_cache[(task.urn, tasks)] = yaml.safe_load(f) + except FileNotFoundError: + logger.exception(f"Task file with path {path} not found.") # pragma: no cover + except yaml.YAMLError: + logger.exception(f"Task file with path {path} could not be parsed.") # pragma: no cover + + def get_tasks_index(self, tasks: Tasks) -> Index: + return self.index_cache[tasks] + + def get_task(self, urn: str, tasks: Tasks) -> dict[str, Any]: + return self.tasks_cache[(urn, tasks)] def generate_index( + tasks: Tasks, base_url: str = "https://task-registry.apps.digilab.network", - directory: str = "instruments", -) -> dict[str, Any]: - index: dict[str, Any] = { - "type": "dir", - "size": 0, - "name": directory, - "path": directory, - "download_url": f"{base_url}/instruments", - "_links": { - "self": f"{base_url}/instruments", - }, - "entries": [], - } - - for root, _, files in os.walk(directory): +) -> Index: + tasks_url = f"{base_url}/{tasks}" + entries: list[FileInfo] = [] + + for root, _, files in os.walk(tasks): for file in files: if file.endswith(".yaml"): file_path = os.path.join(root, file) relative_path = file_path.replace("\\", "/") with open(file_path) as f: - instrument = yaml.safe_load(f) - file_info = { - "type": "file", - "size": get_file_size(file_path), - "name": file, - "path": relative_path, - "urn": instrument["urn"], - "download_url": f"{base_url}/urns/?urn={instrument['urn']}", - "_links": { - "self": f"{base_url}/urns/?urn={instrument['urn']}", - }, - } - index["entries"].append(file_info) - - return index + task = yaml.safe_load(f) + task_url = f"{tasks_url}/urns/{task['urn']}" + file_info = FileInfo( + type="file", + size=os.path.getsize(file_path), + name=file, + path=relative_path, + urn=task["urn"], + download_url=task_url, + _links=Link(self=task_url), + ) + entries.append(file_info) + + return Index( + type="dir", + size=0, + name=tasks.value, + path=tasks.value, + download_url=tasks_url, + _links=Link(self=tasks_url), + entries=entries, + ) diff --git a/task_registry/lifespan.py b/task_registry/lifespan.py index 6968f17..4d41129 100644 --- a/task_registry/lifespan.py +++ b/task_registry/lifespan.py @@ -1,14 +1,13 @@ import logging from collections.abc import AsyncGenerator from contextlib import asynccontextmanager -from typing import Any from fastapi import FastAPI from task_registry.core.config import PROJECT_NAME, VERSION, get_settings from task_registry.core.log import configure_logging -from task_registry.data import create_urn_mappper, generate_index +from task_registry.data import CachedRegistry, Tasks -CACHED_DATA: dict[str, Any] = {} +CACHED_REGISTRY = CachedRegistry() configure_logging(get_settings().LOGGING_LEVEL, get_settings().LOGGING_CONFIG) @@ -18,9 +17,11 @@ @asynccontextmanager async def lifespan(app: FastAPI) -> AsyncGenerator[None, None]: logger.info(f"Starting {PROJECT_NAME} version {VERSION}") - CACHED_DATA["index"] = generate_index() - CACHED_DATA["urn_mapper"] = create_urn_mappper(CACHED_DATA["index"]["entries"]) + + CACHED_REGISTRY.add_tasks(Tasks.INSTRUMENTS) + CACHED_REGISTRY.add_tasks(Tasks.MEASURES) + CACHED_REGISTRY.add_tasks(Tasks.REQUIREMENTS) + yield - CACHED_DATA.clear() logger.info(f"Stopping application {PROJECT_NAME} version {VERSION}") logging.shutdown() diff --git a/task_registry/server.py b/task_registry/server.py index 450fc62..8efeeb4 100644 --- a/task_registry/server.py +++ b/task_registry/server.py @@ -1,6 +1,6 @@ from fastapi import FastAPI from task_registry.api.main import api_router -from task_registry.core.config import PROJECT_DESCRIPTION, PROJECT_NAME, VERSION +from task_registry.core.config import LICENSE_NAME, LICENSE_URL, PROJECT_NAME, PROJECT_SUMMARY, VERSION from task_registry.lifespan import lifespan @@ -8,13 +8,13 @@ def create_app() -> FastAPI: app = FastAPI( lifespan=lifespan, title=PROJECT_NAME, - summary=PROJECT_DESCRIPTION, + summary=PROJECT_SUMMARY, version=VERSION, + license_info={"name": LICENSE_NAME, "url": LICENSE_URL}, docs_url="/", ) app.include_router(api_router) - return app