From ded63b3c2a890e45c1dd0124f15bcd3f7d9384a3 Mon Sep 17 00:00:00 2001 From: hamed musallam Date: Tue, 13 Aug 2024 10:41:33 +0200 Subject: [PATCH 1/4] chore: update dependencies --- package-lock.json | 592 ++++++++++++++++++++++++++-------------------- package.json | 22 +- yarn.lock | 453 ++++++++++++++++++----------------- 3 files changed, 581 insertions(+), 486 deletions(-) diff --git a/package-lock.json b/package-lock.json index 5c86b1f..8d12138 100644 --- a/package-lock.json +++ b/package-lock.json @@ -9,25 +9,25 @@ "version": "1.0.0", "license": "MIT", "dependencies": { - "@blueprintjs/core": "^5.10.3", - "@blueprintjs/icons": "^5.9.0", - "@emotion/react": "^11.11.4", + "@blueprintjs/core": "^5.11.0", + "@blueprintjs/icons": "^5.11.0", + "@emotion/react": "^11.13.0", "fifo-logger": "^1.0.0", "filelist-utils": "^1.11.0", "nmr-load-save": "^0.33.1", "nmr-processing": "^12.3.2", "nmrium": "^0.56.0", "react-science": "^4.0.0", - "vite-plugin-pwa": "^0.20.0" + "vite-plugin-pwa": 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integrity sha512-Nc3IT5yHzflTfbjgqWcCPpo7DaKy4FnpB0l/zCAW0Tc7jxAiuqSxHasntB3D7887LSrA93kDJ9IXovxJYxyLCA== -postcss@^8.4.38: - version "8.4.38" - resolved "https://registry.npmjs.org/postcss/-/postcss-8.4.38.tgz" - integrity sha512-Wglpdk03BSfXkHoQa3b/oulrotAkwrlLDRSOb9D0bN86FdRyE9lppSp33aHNPgBa0JKCoB+drFLZkQoRRYae5A== +postcss@^8.4.40: + version "8.4.41" + resolved "https://registry.npmjs.org/postcss/-/postcss-8.4.41.tgz" + integrity sha512-TesUflQ0WKZqAvg52PWL6kHgLKP6xB6heTOdoYM0Wt2UHyxNa4K25EZZMgKns3BH1RLVbZCREPpLY0rhnNoHVQ== dependencies: nanoid "^3.3.7" - picocolors "^1.0.0" + picocolors "^1.0.1" source-map-js "^1.2.0" prelude-ls@^1.2.1: @@ -6976,10 +6989,10 @@ prelude-ls@^1.2.1: resolved "https://registry.npmjs.org/prelude-ls/-/prelude-ls-1.2.1.tgz" integrity sha512-vkcDPrRZo1QZLbn5RLGPpg/WmIQ65qoWWhcGKf/b5eplkkarX0m9z8ppCat4mlOqUsWpyNuYgO3VRyrYHSzX5g== -prettier@3.3.1: - version "3.3.1" - resolved "https://registry.npmjs.org/prettier/-/prettier-3.3.1.tgz" - integrity sha512-7CAwy5dRsxs8PHXT3twixW9/OEll8MLE0VRPCJyl7CkS6VHGPSlsVaWTiASPTyGyYRyApxlaWTzwUxVNrhcwDg== +prettier@3.3.3: + version "3.3.3" + resolved "https://registry.npmjs.org/prettier/-/prettier-3.3.3.tgz" + integrity sha512-i2tDNA0O5IrMO757lfrdQZCc2jPNDVntV0m/+4whiDfWaTKfMNgR7Qz0NAeGz/nRqF4m5/6CLzbP4/liHt12Ew== pretty-bytes@^5.3.0: version "5.6.0" @@ -7221,20 +7234,20 @@ react-rnd@^10.4.11: react-draggable "4.4.6" tslib "2.6.2" -react-router-dom@^6.23.1: - version "6.23.1" - resolved "https://registry.npmjs.org/react-router-dom/-/react-router-dom-6.23.1.tgz" - integrity sha512-utP+K+aSTtEdbWpC+4gxhdlPFwuEfDKq8ZrPFU65bbRJY+l706qjR7yaidBpo3MSeA/fzwbXWbKBI6ftOnP3OQ== +react-router-dom@^6.26.0: + version "6.26.0" + resolved "https://registry.npmjs.org/react-router-dom/-/react-router-dom-6.26.0.tgz" + integrity sha512-RRGUIiDtLrkX3uYcFiCIxKFWMcWQGMojpYZfcstc63A1+sSnVgILGIm9gNUA6na3Fm1QuPGSBQH2EMbAZOnMsQ== dependencies: - "@remix-run/router" "1.16.1" - react-router "6.23.1" + "@remix-run/router" "1.19.0" + react-router "6.26.0" -react-router@6.23.1: - version "6.23.1" - resolved "https://registry.npmjs.org/react-router/-/react-router-6.23.1.tgz" - integrity sha512-fzcOaRF69uvqbbM7OhvQyBTFDVrrGlsFdS3AL+1KfIBtGETibHzi3FkoTRyiDJnWNc2VxrfvR+657ROHjaNjqQ== +react-router@6.26.0: + version "6.26.0" + resolved "https://registry.npmjs.org/react-router/-/react-router-6.26.0.tgz" + integrity sha512-wVQq0/iFYd3iZ9H2l3N3k4PL8EEHcb0XlU2Na8nEwmiXgIUElEH6gaJDtUQxJ+JFzmIXaQjfdpcGWaM6IoQGxg== dependencies: - "@remix-run/router" "1.16.1" + "@remix-run/router" "1.19.0" react-science@^4.0.0: version "4.0.0" @@ -8182,6 +8195,14 @@ tinycolor2@^1.6.0: resolved "https://registry.npmjs.org/tinycolor2/-/tinycolor2-1.6.0.tgz" integrity sha512-XPaBkWQJdsf3pLKJV9p4qN/S+fm2Oj8AIPo1BTUhg5oxkvm9+SVEGFdhyOz7tTdUTfvxMiAs4sp6/eZO2Ew+pw== +tinyglobby@^0.2.0: + version "0.2.2" + resolved "https://registry.npmjs.org/tinyglobby/-/tinyglobby-0.2.2.tgz" + integrity sha512-mZ2sDMaySvi1PkTp4lTo1In2zjU+cY8OvZsfwrDrx3YGRbXPX1/cbPwCR9zkm3O/Fz9Jo0F1HNgIQ1b8BepqyQ== + dependencies: + fdir "^6.2.0" + picomatch "^4.0.2" + tmpl@1.0.5: version "1.0.5" resolved "https://registry.npmjs.org/tmpl/-/tmpl-1.0.5.tgz" @@ -8349,10 +8370,10 @@ typescript-event-target@^1.1.0: resolved "https://registry.npmjs.org/typescript-event-target/-/typescript-event-target-1.1.0.tgz" integrity sha512-PMrzUVryhnUq2n8M7tjNHNRuIHlUqly5RfGltBTpPCdVpbytgALTRDegF/t6+mFmmtBVhOqEYlbjVNBxwabIug== -"typescript@^4.2.4 || ^5.0.0", typescript@^5.1.6, typescript@^5.4.5, "typescript@>=2.8.0 || >= 3.2.0-dev || >= 3.3.0-dev || >= 3.4.0-dev || >= 3.5.0-dev || >= 3.6.0-dev || >= 3.6.0-beta || >= 3.7.0-dev || >= 3.7.0-beta", typescript@>=4.2.0: - version "5.4.5" - resolved "https://registry.npmjs.org/typescript/-/typescript-5.4.5.tgz" - integrity sha512-vcI4UpRgg81oIRUFwR0WSIHKt11nJ7SAVlYNIu+QpqeyXP+gpQJy/Z4+F0aGxSE4MqwjyXvW/TzgkLAx2AGHwQ== +"typescript@^4.2.4 || ^5.0.0", typescript@^5.1.6, typescript@^5.5.4, "typescript@>=2.8.0 || >= 3.2.0-dev || >= 3.3.0-dev || >= 3.4.0-dev || >= 3.5.0-dev || >= 3.6.0-dev || >= 3.6.0-beta || >= 3.7.0-dev || >= 3.7.0-beta", typescript@>=4.2.0: + version "5.5.4" + resolved "https://registry.npmjs.org/typescript/-/typescript-5.5.4.tgz" + integrity sha512-Mtq29sKDAEYP7aljRgtPOpTvOfbwRWlS6dPRzwjdE+C0R4brX/GUyhHSecbHMFLNBLcJIPt9nl9yG5TZ1weH+Q== unbox-primitive@^1.0.2: version "1.0.2" @@ -8364,10 +8385,10 @@ unbox-primitive@^1.0.2: has-symbols "^1.0.3" which-boxed-primitive "^1.0.2" -undici-types@~5.26.4: - version "5.26.5" - resolved "https://registry.npmjs.org/undici-types/-/undici-types-5.26.5.tgz" - integrity sha512-JlCMO+ehdEIKqlFxk6IfVoAUVmgz7cU7zD/h9XZ0qzeosSHmUJVOzSQvvYSYWXkFXC+IfLKSIffhv0sVZup6pA== +undici-types@~6.13.0: + version "6.13.0" + resolved "https://registry.npmjs.org/undici-types/-/undici-types-6.13.0.tgz" + integrity sha512-xtFJHudx8S2DSoujjMd1WeWvn7KKWFRESZTMeL1RptAYERu29D6jphMjjY+vn96jvN3kVPDNxU/E13VTaXj6jg== unicode-canonical-property-names-ecmascript@^2.0.0: version "2.0.0" @@ -8509,24 +8530,24 @@ vary@~1.1.2: resolved "https://registry.npmjs.org/vary/-/vary-1.1.2.tgz" integrity sha512-BNGbWLfd0eUPabhkXUVm0j8uuvREyTh5ovRa/dyow/BqAbZJyC+5fU+IzQOzmAKzYqYRAISoRhdQr3eIZ/PXqg== -vite-plugin-pwa@^0.20.0: - version "0.20.0" - resolved "https://registry.npmjs.org/vite-plugin-pwa/-/vite-plugin-pwa-0.20.0.tgz" - integrity sha512-/kDZyqF8KqoXRpMUQtR5Atri/7BWayW8Gp7Kz/4bfstsV6zSFTxjREbXZYL7zSuRL40HGA+o2hvUAFRmC+bL7g== +vite-plugin-pwa@^0.20.1: + version "0.20.1" + resolved "https://registry.npmjs.org/vite-plugin-pwa/-/vite-plugin-pwa-0.20.1.tgz" + integrity sha512-M6Pk4b18i5ryrhKgiIF8Zud0HGphYiCbEfLsCdlvmwn/CEnS6noVwfIDG/+3V7r6yxpPV/gLiKw+rIlCCiCCoQ== dependencies: debug "^4.3.4" - fast-glob "^3.3.2" pretty-bytes "^6.1.1" + tinyglobby "^0.2.0" workbox-build "^7.1.0" workbox-window "^7.1.0" -"vite@^3.1.0 || ^4.0.0 || ^5.0.0", "vite@^4 || ^5", vite@^5.2.12: - version "5.2.12" - resolved "https://registry.npmjs.org/vite/-/vite-5.2.12.tgz" - integrity sha512-/gC8GxzxMK5ntBwb48pR32GGhENnjtY30G4A0jemunsBkiEZFw60s8InGpN8gkhHEkjnRK1aSAxeQgwvFhUHAA== +"vite@^3.1.0 || ^4.0.0 || ^5.0.0", "vite@^4 || ^5", vite@^5.4.0: + version "5.4.0" + resolved "https://registry.npmjs.org/vite/-/vite-5.4.0.tgz" + integrity sha512-5xokfMX0PIiwCMCMb9ZJcMyh5wbBun0zUzKib+L65vAZ8GY9ePZMXxFrHbr/Kyll2+LSCY7xtERPpxkBDKngwg== dependencies: - esbuild "^0.20.1" - postcss "^8.4.38" + esbuild "^0.21.3" + postcss "^8.4.40" rollup "^4.13.0" optionalDependencies: fsevents "~2.3.3" From 1cae0def964a30429b8e9982cd65d0c7012c6c8b Mon Sep 17 00:00:00 2001 From: hamed musallam Date: Tue, 13 Aug 2024 10:51:35 +0200 Subject: [PATCH 2/4] chore: update eslint chore: eslint ignore 'vite.config.ts' --- .eslintignore | 8 - .eslintrc.yml | 22 - eslint.config.mjs | 47 + package-lock.json | 3036 +++++++++++++++++++++++++-------------------- package.json | 4 +- yarn.lock | 1594 ++++++++++++------------ 6 files changed, 2547 insertions(+), 2164 deletions(-) delete mode 100644 .eslintignore delete mode 100644 .eslintrc.yml create mode 100644 eslint.config.mjs diff --git a/.eslintignore b/.eslintignore deleted file mode 100644 index 731e5f2..0000000 --- a/.eslintignore +++ /dev/null @@ -1,8 +0,0 @@ -dist -node_modules -public -build -src/*.json -vite.config.* -lib -coverage diff --git a/.eslintrc.yml b/.eslintrc.yml deleted file mode 100644 index c234769..0000000 --- a/.eslintrc.yml +++ /dev/null @@ -1,22 +0,0 @@ -root: true -extends: - - cheminfo-react/base - - cheminfo-typescript/base - - cheminfo-typescript/unicorn -rules: - 'import/default': off - 'import/no-unresolved': off - 'react-refresh/only-export-components': off - '@typescript-eslint/naming-convention': off - '@typescript-eslint/restrict-plus-operands': off - 'react/no-unstable-nested-components': off - no-restricted-imports: - - error - - name: '@simbathesailor/use-what-changed' - message: 'Remove use-what-changed before committing the code' - react/no-unknown-property: - - error - - ignore: - - 'css' -parserOptions: - sourceType: module \ No newline at end of file diff --git a/eslint.config.mjs b/eslint.config.mjs new file mode 100644 index 0000000..0a2d98d --- /dev/null +++ b/eslint.config.mjs @@ -0,0 +1,47 @@ +import react from 'eslint-config-cheminfo-react/base'; +import ts from 'eslint-config-cheminfo-typescript/base'; +import unicorn from 'eslint-config-cheminfo-typescript/unicorn'; + +export default [ + { + ignores: [ + 'dist', + 'build', + 'coverage', + 'lib', + 'lib-cjs', + 'node_modules', + 'playwright-report', + 'public', + 'vite.config.ts' + ], + }, + ...ts, + ...unicorn, + ...react, + { + rules: { + 'import/default': 'off', + 'import/no-unresolved': 'off', + 'react-refresh/only-export-components': 'off', + '@typescript-eslint/no-explicit-any': 'off', + '@typescript-eslint/naming-convention': 'off', + '@typescript-eslint/no-implied-eval': 'off', + '@typescript-eslint/no-misused-promises': 'off', + '@typescript-eslint/restrict-plus-operands': 'off', + 'react/no-unstable-nested-components': 'off', + 'no-restricted-imports': [ + 'error', + { + name: 'lodash', + message: "Use a deep import instead, like for example 'lodash/get'", + }, + { + name: '@simbathesailor/use-what-changed', + message: 'Remove use-what-changed before committing the code', + } + ], + 'react/no-unknown-property': ['error', { ignore: ['css'] }], + }, + }, +]; \ No newline at end of file diff --git a/package-lock.json b/package-lock.json index 8d12138..885dda9 100644 --- a/package-lock.json +++ b/package-lock.json @@ -34,8 +34,8 @@ "@vitejs/plugin-react-swc": "^3.7.0", "cross-env": "^7.0.3", "eslint": "^8.57.0", - "eslint-config-cheminfo-react": "^11.0.1", - "eslint-config-cheminfo-typescript": "^12.4.0", + "eslint-config-cheminfo-react": "^13.0.0", + "eslint-config-cheminfo-typescript": "^15.0.0", "jest": "^29.7.0", "prettier": "3.3.3", "react": "^18.3.1", @@ -116,11 +116,6 @@ "url": "https://opencollective.com/babel" } }, - "node_modules/@babel/core/node_modules/convert-source-map": { - "version": "2.0.0", - "resolved": "https://registry.npmjs.org/convert-source-map/-/convert-source-map-2.0.0.tgz", - "integrity": "sha512-Kvp459HrV2FEJ1CAsi1Ku+MY3kasH19TFykTz2xWmMeq6bk2NU3XXvfJ+Q61m0xktWwt+1HSYf3JZsTms3aRJg==" - }, "node_modules/@babel/generator": { "version": "7.25.0", "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.25.0.tgz", @@ -1909,10 +1904,10 @@ "stylis": "4.2.0" } }, - "node_modules/@emotion/babel-plugin/node_modules/@emotion/memoize": { - "version": "0.9.0", - "resolved": "https://registry.npmjs.org/@emotion/memoize/-/memoize-0.9.0.tgz", - "integrity": "sha512-30FAj7/EoJ5mwVPOWhAyCX+FPfMDrVecJAM+Iw9NRoSl4BBAQeqj4cApHHUXOVvIPgLVDsCFoz/hGD+5QQD1GQ==" + "node_modules/@emotion/babel-plugin/node_modules/convert-source-map": { + "version": "1.9.0", + "resolved": "https://registry.npmjs.org/convert-source-map/-/convert-source-map-1.9.0.tgz", 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From 4bbc18173caf21d02a396ed278ccc2882b221a95 Mon Sep 17 00:00:00 2001 From: hamed musallam Date: Tue, 13 Aug 2024 10:55:29 +0200 Subject: [PATCH 3/4] chore: update react-science --- package-lock.json | 1681 ++++++++++++++++++++++----------------------- package.json | 2 +- yarn.lock | 1155 +++++++++++++++---------------- 3 files changed, 1379 insertions(+), 1459 deletions(-) diff --git a/package-lock.json b/package-lock.json index 885dda9..47542bf 100644 --- a/package-lock.json +++ b/package-lock.json @@ -17,7 +17,7 @@ "nmr-load-save": "^0.33.1", "nmr-processing": "^12.3.2", "nmrium": "^0.56.0", - "react-science": "^4.0.0", + "react-science": "^6.0.0", "vite-plugin-pwa": "^0.20.1" }, "devDependencies": { @@ -1866,12 +1866,12 @@ } }, "node_modules/@blueprintjs/select": { - "version": "5.1.5", - "resolved": "https://registry.npmjs.org/@blueprintjs/select/-/select-5.1.5.tgz", - "integrity": "sha512-7oSO6fmZ9lZpzPpAuxoIzgczTWvyNmUOxDUAzO5LltcKL5jNg9V8L/wADNvRTrr9MAw8IbVwEw5fPDeZ8iP3Vg==", 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@@ -14454,9 +14277,9 @@ } }, "node_modules/react-use": { - "version": "17.5.0", - "resolved": "https://registry.npmjs.org/react-use/-/react-use-17.5.0.tgz", - "integrity": "sha512-PbfwSPMwp/hoL847rLnm/qkjg3sTRCvn6YhUZiHaUa3FA6/aNoFX79ul5Xt70O1rK+9GxSVqkY0eTwMdsR/bWg==", + "version": "17.5.1", + "resolved": "https://registry.npmjs.org/react-use/-/react-use-17.5.1.tgz", + "integrity": "sha512-LG/uPEVRflLWMwi3j/sZqR00nF6JGqTTDblkXK2nzXsIvij06hXl1V/MZIlwj1OKIQUtlh1l9jK8gLsRyCQxMg==", "dependencies": { "@types/js-cookie": "^2.2.6", "@xobotyi/scrollbar-width": "^1.9.5", @@ -14464,7 +14287,7 @@ "fast-deep-equal": "^3.1.3", "fast-shallow-equal": "^1.0.0", "js-cookie": "^2.2.1", - "nano-css": "^5.6.1", + "nano-css": "^5.6.2", "react-universal-interface": "^0.6.2", "resize-observer-polyfill": "^1.5.1", "screenfull": "^5.1.0", diff --git a/package.json b/package.json index 539abcc..ff412ea 100644 --- a/package.json +++ b/package.json @@ -16,10 +16,10 @@ "@blueprintjs/icons": "^5.11.0", "@emotion/react": "^11.13.0", "fifo-logger": "^1.0.0", - "filelist-utils": "^1.11.0", - "nmr-load-save": "^0.33.1", - "nmr-processing": "^12.3.2", - "nmrium": "^0.56.0", + "filelist-utils": "^1.11.1", + "nmr-load-save": "^0.37.0", + "nmr-processing": "^12.12.0", + "nmrium": "^0.59.0", "react-science": "^6.0.0", "vite-plugin-pwa": "^0.20.1" }, diff --git a/src/NMRiumWrapper.tsx b/src/NMRiumWrapper.tsx index fb6e65f..d6111e7 100644 --- a/src/NMRiumWrapper.tsx +++ b/src/NMRiumWrapper.tsx @@ -1,4 +1,4 @@ -import { NMRium, NMRiumData, NMRiumRef, NMRiumChangeCb } from 'nmrium'; +import { NMRium, NMRiumData, NMRiumRefAPI, NMRiumChangeCb } from 'nmrium'; import { useEffect, useState, useCallback, CSSProperties, useRef } from 'react'; import { RootLayout } from 'react-science/ui'; @@ -34,7 +34,7 @@ const styles: Record<'container' | 'loadingContainer', CSSProperties> = { export default function NMRiumWrapper() { const { allowedOrigins, isFetchAllowedOriginsPending } = useWhiteList(); - const nmriumRef = useRef(null); + const nmriumRef = useRef(null); const [data, setDate] = useState(); const { workspace, preferences, defaultEmptyMessage, customWorkspaces } = diff --git a/test-e2e/core.test.ts b/test-e2e/core.test.ts index 6f3139e..80e1fe9 100644 --- a/test-e2e/core.test.ts +++ b/test-e2e/core.test.ts @@ -3,8 +3,8 @@ import { test, expect } from '@playwright/test'; import NmriumWrapperPage from './NmriumWrapperPage'; async function testLoadStructure(nmrium: NmriumWrapperPage) { - // Open the "Structures" panel. - await nmrium.page.click('button >> text=Structures'); + // Open the "Chemical structures" panel. + await nmrium.page.click('div >> text=Chemical structures'); // The molecule SVG rendering should now be visible in the panel. await expect( diff --git a/yarn.lock b/yarn.lock index 0747701..4feeb1e 100644 --- a/yarn.lock +++ b/yarn.lock @@ -1068,7 +1068,7 @@ dependencies: tslib "~2.6.2" -"@blueprintjs/core@^5.10.3", "@blueprintjs/core@^5.11.0": 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