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Add parameter file generation reference to the initial BCI run description #63

@glemieux

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@glemieux

We should add a parameter file modification/generation cross reference from docs/source/parameter_file_tools.md to the create scripts section:

The next bit is where we edit the user_nl_elm file. The user_nl_elm file specifies
namelist options, such as which optional modules to turn on, and points to the parameter file and inventory data.
It also defines which history variables to output.
```
# point to your parameter file
# add any history variables you want
cat >> user_nl_elm <<EOF
fsurdat = '${ELM_SURFDAT_DIR}/${ELM_USRDAT_SURDAT}'
fates_paramfile='${PARAM_FILES}/fates_params_default-1pft.nc'

This came up per #62

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