.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData
.RDataTmp

# Ignore specific folders
output/
manuscript/

# README html 
README.html

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Other files
**/.DS_Store
**/._.DS_Store
../._create-prediction-grid.Rmd
../._map-nc-land-covariates.Rmd
# Hidden folders
.DS_Store/
._.DS_Store/
/.DS_Store
/._.DS_Store
*.zip

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# Specific vignettes
vignettes/calc_nlcd_ratio_monitors.Rmd

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

# pkgdown site
docs/

# translation temp files
po/*~

# RStudio Connect folder
rsconnect/


#Mitchell test folder
code/mitchell_tests/
# Generic open or temporary files
._.*
._.gitignore
._*

# Insang's negative value exploration script
tools/negative_exploration
tools/metalearner_test
tools/shiny_explore_pm/missingness_exploration_pm_quarto_shiny_data/

# NASA Earthdata login credentials
.dodsrc

# raw data
input

# pipeline
_targets

# future batchtools outputs
.future
slurm_error.log

# SLURM messages and logs
**/*.err
**/*.out

# Apptainer images
**/*.sif
/Meta/
/doc/

# interactive targets
targets_start.Rout

.netrc
.urs_cookies
beethoven_branching_notes.txt