Environment Variables #437
Description
We need to try to test out being as careful as possible with environment variables to ensure all aspects of the timeline communicate appropriately. I know @mitchellmanware has built environment variables in the bash scripts and with beethoven code like beethoven::sys_beethoven
So for documentation purposes, I am putting in environment variables from the different systems. Feel free to edit as needed:
Linux HPC system
BASH_FUNC_ml%%BASH_FUNC_module%%BASH_FUNC_scl%%BASH_FUNC_switchml%%BASH_FUNC_which%%BOWTIE2_INDEXESBROWSERCOLORTERMCOLUMNSDBUS_SESSION_BUS_ADDRESSDEBUGINFOD_URLSEDITORGIT_ASKPASSHISTCONTROLHISTSIZEHOMEHOSTNAMELANGLD_LIBRARY_PATHLESSOPENLINESLN_SLOADEDMODULESLOGNAMEMAILMAKEMANPATHMODULEPATHMODULEPATH_modshareMODULES_CMDMODULES_RUN_QUARANTINEMODULESHOMEOMP_NUM_THREADSOPENBLAS_NUM_THREADSORA_REF_PATHPAGERPATHPICARDPWDPYTHON_BASIC_REPLPYTHONSTARTUPR_ARCHR_BROWSERR_BZIPCMDR_DOC_DIRR_GZIPCMDR_HOMER_INCLUDE_DIRR_LIBS_SITER_LIBS_USERR_PAPERSIZER_PDFVIEWERR_PLATFORMR_PRINTCMDR_PROFILE_USERR_PROFILE_USER_OLDR_RD4PDFR_SESSION_TMPDIRR_SHARE_DIRR_STRIP_SHARED_LIBR_STRIP_STATIC_LIBR_SYSTEM_ABIR_TEXI2DVICMDR_UNZIPCMDR_ZIPCMDRENV_CONFIG_SANDBOX_ENABLEDRENV_CONFIG_SYNCHRONIZED_CHECKS_COLORSSEDSHELLSHLVLSSH_ASKPASSSSH_CLIENTSSH_CONNECTIONSSL_CERT_DIRSSL_CERT_FILETARTERMTERM_PROGRAMTERM_PROGRAM_VERSIONUSERVSCODE_GIT_ASKPASS_EXTRA_ARGSVSCODE_GIT_ASKPASS_MAINVSCODE_GIT_ASKPASS_NODEVSCODE_GIT_IPC_HANDLEVSCODE_INIT_RVSCODE_IPC_HOOK_CLIVSCODE_NONCEVSCODE_WATCHER_DIRwhich_declareXDG_DATA_DIRSXDG_RUNTIME_DIRXDG_SESSION_ID
Apptainer
https://apptainer.org/docs/user/1.4/appendix.html#apptainer-s-environment-variables
Additional Software
CUDA_HOME