Missing genes

[RemiDL]

Dear cellxgene-gateway team,
Thanks for your excellent tool, I have a basic question:

If I run a cellxgene gateway on a server, on a h5ad object, it appears that lots of genes are missing compared to if I cellxgene -launch it locally on my computer (same h5ad file).
Is there an argument that I am missing, to reduce available genes, or to restrict it to variable genes ?

Thanks for your help
Best
Rémi

[alokito]

Hi Remi! That should not be the case. Is there an example file you can share that reproduces the issue?

[RemiDL]

Dear Alok, While searching which data to share with you I actually figured out. What I learned: I didn't scale my data as I thought, and only the scale.data genes from seurat object, converted to h5ad format while be available in the cellxene... Sorry for disturbing for nothing. I wish you all the best and thanks again Rémi

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________________________________ De : Alok Saldanha ***@***.***> Envoyé : mercredi 12 juin 2024 16:57 À : Novartis/cellxgene-gateway ***@***.***> Cc : RemiDL ***@***.***>; Author ***@***.***> Objet : Re: [Novartis/cellxgene-gateway] Missing genes (Issue #93) Hi Remi! That should not be the case. Is there an example file you can share that reproduces the issue? — Reply to this email directly, view it on GitHub<#93 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AO3IJIX4ZH46DUSXXWYBH2DZHBOWNAVCNFSM6AAAAABJGOLZVCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCNRTGI2TQOBTGI>. You are receiving this because you authored the thread.