Resolve importing BIDS data into MIQA

[aashish24]

Develop scripts to map data in BIDS datasets into MIQA. Evaluating mapping subject and other content into MIQA metadata.

[curtislisle]

Update: an example was developed where two cohorts were created from the PREDICT BIDS dataset. A CSV was generated that maps each cohort into a MIQA experiment in preparation for demonstrating for our UIowa collaborator. The auto-evaluation didn't run on this new project, but this could be a local problem with git-lfs on the development server.

[annehaley]

@curtislisle Is your new instance doing this? Or is there something else involved in this issue that needs to be addressed?

[curtislisle]

We aren’t completely addressing BIDS import yet. I think this would best be solved by creating a Python script we add in an examples directory. We could discuss next week at your convenience.

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On Jun 9, 2022, at 2:22 PM, Anne Haley ***@***.***> wrote:  @curtislisle Is your new instance doing this? Or is there something else involved in this issue that needs to be addressed? — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.

[annehaley]

@curtislisle and I discussed this and decided that we can return to this once the python client is complete (and #528 is resolved). We can include an example script or Jupyter notebook which uses the python module to read a BIDS directory structure and upload it to MIQA.