The structure of janis-bioinformatics isn't great, here are some suggestions: - We grouped tools by their tool provider, but really should've done it by the tool name / base command. Eg: - `gatk4` tools in a folder called `gatk`, - `samtools` tools in a folder called `samtools`, - `fastqc` in a folder called `fastqc` (not in `babrahambioinformatics`) - Reduce the clutter of `base.py` + `versions.py` - Move all the workflows into a folder called `workflows` _This list is to be updated as new information is discussed_