sfs.cpp

#include "sfs.hpp"

using namespace std ;

bool operator<(const SFS &x, const SFS &y) { return x.s < y.s; }

map<string, vector<SFS>> parse_sfsfile(const string &sfs_path, int tau) {
    map<string, vector<SFS>> SFSs;
    string line;
    ifstream inf(sfs_path);
    if (inf.is_open()) {
        string info[4];
        string read_name;
        while (getline(inf, line)) {
            stringstream ssin(line);
            int i = 0;
            while (ssin.good() && i < 5) {
                ssin >> info[i++];
            }
            if (stoi(info[3]) < tau) {
                continue;
            }
            if (info[0].compare("*") != 0) {
                read_name = info[0];
                SFSs[read_name] = vector<SFS>();
            }
            //TODO
            SFSs[read_name].push_back(SFS(stoi(info[1]), stoi(info[2]), stoi(info[3]), true)) ;//info[4].compare("1") == 0));
        }
    }
    return SFSs;
}