Fix logging format handling and change some debug to info.

Author: NikoOinonen

ppafm/logging_utils.py

@@ -100,14 +100,18 @@ def configure_logging(
 
     if format is None:
         try:
-            format = os.environ["PPAFM_LOG_FORMAT"]
+            _log_format = os.environ["PPAFM_LOG_FORMAT"]
+            formatter = logging.Formatter(fmt=_log_format)
         except KeyError:
             if _root_logger.level == logging.DEBUG:
                 _log_format = "[%(asctime)s - %(name)s - %(levelname)s] %(message)s"
                 formatter = logging.Formatter(fmt=_log_format)
             else:
                 _log_format = "%(message)s"
                 formatter = _DefaultFormatter()
+    else:
+        _log_format = format
+        formatter = logging.Formatter(fmt=_log_format)
     _log_handler.setFormatter(formatter)
 
 

ppafm/ml/CorrectionLoop.py

@@ -457,9 +457,9 @@ def Job_CorrectionLoop(simulator, atoms, bonds, geom_fname="input.xyz", nstep=10
 
     looper.startLoop(molecule, atomMap, bondMap, lvecMap, AFMRef)
     ErrConv = 0.1
-    logger.debug("# ------ To Loop    ")
+    logger.info("# ------ To Loop    ")
     for itr in range(nstep):
-        logger.debug(f"# ======= CorrectionLoop[ {itr} ] ")
+        logger.info(f"# ======= CorrectionLoop[ {itr} ] ")
         Err = looper.iteration(itr=itr)
         if Err < ErrConv:
             break