Another round of URL updates

Author: eddelbuettel

ChangeLog

@@ -3,6 +3,7 @@
 	* vignettes/rmd/Rcpp.bib: Update to several URLs
 	* inst/bib/Rcpp.bib: Idem
 	* vignettes/rmd/*: Idem
+	* README.md: Idem
 
 2026-01-06  Dirk Eddelbuettel  <[email protected]>
 

README.md

@@ -14,7 +14,7 @@
 [![CRAN indirect](https://jangorecki.gitlab.io/rdeps/Rcpp/indirect_usage.svg?sanitize=true)](https://cran.r-project.org/package=Rcpp)
 [![BioConductor use](https://jangorecki.gitlab.io/rdeps/Rcpp/BioC_usage.svg?sanitize=true)](https://cran.r-project.org/package=Rcpp)
 [![JSS](https://img.shields.io/badge/JSS-10.18637%2Fjss.v040.i08-brightgreen)](https://doi.org/10.18637/jss.v040.i08)
-[![Springer useR!](https://img.shields.io/badge/Springer%20useR!-10.1007%2F978--1--4614--6868--4-brightgreen)](https://www.amazon.com/gp/product/1461468671/ref=as_li_tl?ie=UTF8&camp=1789&creative=9325&creativeASIN=1461468671&linkCode=as2&tag=rcpp-20&linkId=3P5LNUWOAQ2YMEJ6)
+[![Springer useR!](https://img.shields.io/badge/Springer%20useR!-10.1007%2F978--1--4614--6868--4-brightgreen)](https://link.springer.com/book/10.1007/978-1-4614-6868-4)
 [![TAS](https://img.shields.io/badge/TAS-10.1080%2F00031305.2017.1375990-brightgreen)](https://doi.org/10.1080/00031305.2017.1375990)
 
 ### Synopsis
@@ -37,7 +37,7 @@ provides a good entry point to Rcpp as do the [Rcpp
 website](https://www.rcpp.org), the [Rcpp
 page](https://dirk.eddelbuettel.com/code/rcpp.html) and the [Rcpp
 Gallery](https://gallery.rcpp.org). Full documentation is provided by the
-[Rcpp book](https://www.amazon.com/gp/product/1461468671/ref=as_li_tl?ie=UTF8&camp=1789&creative=9325&creativeASIN=1461468671&linkCode=as2&tag=rcpp-20&linkId=3P5LNUWOAQ2YMEJ6).
+[Rcpp book](https://link.springer.com/book/10.1007/978-1-4614-6868-4).
 
 Other highlights:
 
@@ -78,7 +78,7 @@ Among the other vignettes are the [Rcpp
 FAQ](https://cran.r-project.org/package=Rcpp/vignettes/Rcpp-FAQ.pdf) and the
 introduction to [Rcpp
 Attributes](https://cran.r-project.org/package=Rcpp/vignettes/Rcpp-attributes.pdf).
-Additional documentation is available via the [Rcpp book](https://www.amazon.com/gp/product/1461468671/ref=as_li_tl?ie=UTF8&camp=1789&creative=9325&creativeASIN=1461468671&linkCode=as2&tag=rcpp-20&linkId=3P5LNUWOAQ2YMEJ6)
+Additional documentation is available via the [Rcpp book](https://link.springer.com/book/10.1007/978-1-4614-6868-4)
 by Eddelbuettel (2013, Springer); see 'citation("Rcpp")' for details.
 
 ### Performance

inst/bib/Rcpp.bib

@@ -774,7 +774,7 @@ @Article{PeerJ:Rcpp
   year =         2017,
   month =        {August},
   url =          {https://peerj.com/preprints/3188v1/},
-  doi =          {10.7287/peerj.preprints.3188v1/}
+  doi =          {10.7287/peerj.preprints.3188v1}
 }
 
 @Book{Plauger+Et+Al:2000:STL,

vignettes/rmd/Makefile

@@ -11,13 +11,12 @@ rmdvignettes := 	$(rmdsources:.Rmd=.pdf)
 
 all:			${rmdvignettes} Rcpp-jss-2011.pdf
 
-Rcpp-jss-2011.tex:	Rcpp-jss-2011.Rnw
-			Rscript -e 'Sweave("$<")'
-
-Rcpp-jss-2011.pdf:	Rcpp-jss-2011.tex
-			Rscript -e 'tools::texi2pdf("$<", texi2dvi="pdflatex")'
+Rcpp-jss-2011.pdf:	Rcpp-jss-2011.Rnw
+			Rscript -e 'Sweave("Rcpp-jss-2011.Rnw")'
+			pdflatex Rcpp-jss-2011.tex
 			bibtex Rcpp-jss-2011.aux
-			Rscript -e 'tools::texi2pdf("$<", texi2dvi="pdflatex")'
+			pdflatex Rcpp-jss-2011.tex
+			pdflatex Rcpp-jss-2011.tex
 			Rscript -e 'tools::compactPDF("$@", gs_quality="ebook")'
 			cp -vax $@ ..
 

vignettes/rmd/Rcpp-FAQ.Rmd

@@ -478,7 +478,7 @@ able to mix. In such cases, it is better to provide collaborators with the
 
 By default, the macOS operating environment lacks the ability to parallelize
 sections of code using the [\proglang{OpenMP}
-standard](https://www.openmp.org/wp/).  Within \proglang{R} 3.4.*, the default
+standard](https://www.openmp.org/specifications/).  Within \proglang{R} 3.4.*, the default
 developer environment was _changed_ to allow for \proglang{OpenMP} to be used
 on macOS by using a non-default toolchain provided by R Core Team maintainers
 for macOS.  Having said this, it is still important to protect any reference
@@ -1257,8 +1257,7 @@ You can also use [StackOverflow via its 'rcpp' tag](https://stackoverflow.com/qu
 ## Where can I read old questions and answers
 
 The normal [Rcpp-devel](https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel)
-mailing list hosting at R-forge contains an archive, which can be
-[searched via swish](https://lists.r-forge.r-project.org/mailman/swish.cgi?query=listname=rcpp-devel).
+mailing list hosting at R-forge contains an archive.
 
 Alternatively, one can also use
 [Mail-Archive on Rcpp-devel](http://www.mail-archive.com/[email protected]/info.html)

vignettes/rmd/Rcpp-introduction.Rmd

@@ -625,7 +625,7 @@ in place of `sample(n, n, replace = TRUE)` to sample row ids. This is an
 equivalent substitution since equal weight is being placed upon all row ids and
 replacement is allowed.\footnote{For more flexibility in sampling see Christian Gunning's
 Sample extension for \pkg{RcppArmadillo} and
-\href{http://gallery.rcpp.org/articles/using-the-Rcpp-based-sample-implementation/}{Rcpp Gallery: Using the \pkg{RcppArmadillo}-based Implementation of R's sample()} or consider using the \code{Rcpp::sample()} sugar function added in 0.12.9 by Nathan Russell.}
+\href{https://gallery.rcpp.org/articles/using-the-Rcpp-based-sample-implementation/}{Rcpp Gallery: Using the \pkg{RcppArmadillo}-based Implementation of R's sample()} or consider using the \code{Rcpp::sample()} sugar function added in 0.12.9 by Nathan Russell.}
 Note that the upper bound of the interval, `n`, will never be reached. While
 this may seem flawed, it is important to note that vectors and matrices in
 \cpp use a zero-based indexing system, meaning that they begin at 0 instead of 1
@@ -718,7 +718,7 @@ classes \citep{Sanderson+Curtin:2016} via the \pkg{RcppArmadillo} package
 running this example, the \pkg{RcppArmadillo} package must be installed using
 `install.packages('RcppArmadillo')`.\footnote{macOS users may encounter `-lgfortran`
 and `-lquadmath` errors on compilations with this package if the development environment
-is not appropriately set up. \href{https://cran.r-project.org/web/packages/Rcpp/vignettes/Rcpp-FAQ.pdf}{Section 2.16 of the Rcpp FAQ} provides details regarding the necessary `gfortran` binaries.}
+is not appropriately set up. \href{https://cran.r-project.org/package=Rcpp/vignettes/Rcpp-FAQ.pdf}{Section 2.16 of the Rcpp FAQ} provides details regarding the necessary `gfortran` binaries.}
 One important caveat when using additional packages
 within the \rcpp ecosystem is the correct header file may not be `Rcpp.h`.
 In a majority of cases, the additional package ships a dedicated header

vignettes/rmd/Rcpp-package.Rmd

@@ -76,7 +76,7 @@ header-includes: >
   \newcommand{\proglang}[1]{\textsf{#1}}
   \newcommand{\pkg}[1]{\textbf{#1}}
   \newcommand{\faq}[1]{FAQ~\ref{#1}}
-  \newcommand{\rdoc}[2]{\href{http://www.rdocumentation.org/packages/#1/functions/#2}{\code{#2}}}
+  \newcommand{\rdoc}[2]{\code{#2}}
   \newcommand{\sugar}{\textsl{Rcpp sugar}~}
 
 vignette: >

vignettes/rmd/Rcpp.bib

@@ -774,7 +774,7 @@ @Article{PeerJ:Rcpp
   year =         2017,
   month =        {August},
   url =          {https://peerj.com/preprints/3188v1/},
-  doi =          {10.7287/peerj.preprints.3188v1/}
+  doi =          {10.7287/peerj.preprints.3188v1}
 }
 
 @Book{Plauger+Et+Al:2000:STL,