From 640c945fe4b50eeecc736fb93aeb3d48b5dd28b6 Mon Sep 17 00:00:00 2001 From: Maxime Borry Date: Tue, 17 Sep 2024 11:23:20 +0000 Subject: [PATCH 1/2] taxprofiling: add abstract --- section-ancient-metagenomics.qmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/section-ancient-metagenomics.qmd b/section-ancient-metagenomics.qmd index 7388f43..3546ef2 100644 --- a/section-ancient-metagenomics.qmd +++ b/section-ancient-metagenomics.qmd @@ -7,9 +7,9 @@ The techniques in this section of the book can be used in a variety of stages of ## [Taxonomic Profiling](taxonomic-profiling.qmd) - +One of the first questions when looking at metagenomics data is often *"Who is there ?"* But this question is actually not specific to (ancient) metagenomics, but in fact is a broader ecological question that has first been applied to macro ecological systems. -_TBC_ +In this chapter, we will show you how to answer this question at the microbial scale using methods applied to ancient metagenomics data. We will talk about taxonomic profiling, ecological diversity metrics, how to compare different samples and see how they relate through their community composition. We will learn about taxonomic profiler tools, ways to analyze and visualize taxonomic profiles, libraries to manipulate taxonomic profile tables, and libraries to compute and visualize ecological diversity metrics. ## [_De novo_ Assembly](denovo-assembly.qmd) From 0748f23bf3c97a79755740792edaf60282406b70 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Tue, 17 Sep 2024 13:30:40 +0200 Subject: [PATCH 2/2] One line per snetnece rule --- section-ancient-metagenomics.qmd | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/section-ancient-metagenomics.qmd b/section-ancient-metagenomics.qmd index 3546ef2..a28bd4b 100644 --- a/section-ancient-metagenomics.qmd +++ b/section-ancient-metagenomics.qmd @@ -6,11 +6,11 @@ The techniques in this section of the book can be used in a variety of stages of ## [Taxonomic Profiling](taxonomic-profiling.qmd) +One of the first questions when looking at metagenomics data is often _Who is there?_. But this question is actually not specific to (ancient) metagenomics, but in fact is a broader ecological question that has first been applied to macro ecological systems. -One of the first questions when looking at metagenomics data is often *"Who is there ?"* But this question is actually not specific to (ancient) metagenomics, but in fact is a broader ecological question that has first been applied to macro ecological systems. - -In this chapter, we will show you how to answer this question at the microbial scale using methods applied to ancient metagenomics data. We will talk about taxonomic profiling, ecological diversity metrics, how to compare different samples and see how they relate through their community composition. We will learn about taxonomic profiler tools, ways to analyze and visualize taxonomic profiles, libraries to manipulate taxonomic profile tables, and libraries to compute and visualize ecological diversity metrics. - +In this chapter, we will show you how to answer this question at the microbial scale using methods applied to ancient metagenomics data. +We will talk about taxonomic profiling, ecological diversity metrics, how to compare different samples and see how they relate through their community composition. +We will learn about taxonomic profiler tools, ways to analyze and visualize taxonomic profiles, libraries to manipulate taxonomic profile tables, and libraries to compute and visualize ecological diversity metrics. ## [_De novo_ Assembly](denovo-assembly.qmd)