NPEFix not finding patches Bugs it should

[andre15silva]

This is related to eclipse/repairnator#1159

	1.5 (uses fr.inria.spirals 0.7)	1.5.1 (uses fr.inria.gforge.spirals 0.7)	1.6-SNAPSHOT (master) (uses fr.inria.gforge.spirals 0.7)
collections-331	Compilation failure (unrelated to NPEFix)	Compilation failure (unrelated to NPEFix)	Compilation failure (unrelated to NPEFix)
collections-360	Compilation failure (unrelated to NPEFix)	Compilation failure (unrelated to NPEFix)	Compilation failure (unrelated to NPEFix)
felix-4960	Patch found	Patch found	Patch found
lang-304	Patch found	Patch found	JSONObject["executions"] not found.
lang-587	No diffs	JSONObject["executions"] not found.	JSONObject["executions"] not found.
lang-703	No diffs	JSONObject["executions"] not found.	JSONObject["executions"] not found.
math-290	No executions	JSONObject["executions"] not found.	JSONObject["executions"] not found.
math-305	No executions	JSONObject["executions"] not found.	JSONObject["executions"] not found.
math-369	No executions	JSONObject["executions"] not found.	JSONObject["executions"] not found.
math-988a	Has diffs	Patch found	Patch found
math-988b	No executions	JSONObject["executions"] not found.	JSONObject["executions"] not found.
math-1115	No executions	JSONObject["executions"] not found.	JSONObject["executions"] not found.
math-1117	No executions	JSONObject["executions"] not found.	JSONObject["executions"] not found.
pdfbox_2812	Could not resolve dependencies (unrelated to NPEFix)	Could not resolve dependencies (unrelated to NPEFix)	Could not resolve dependencies (unrelated to NPEFix)
pdfbox_2965	Has diffs	Patch found	Patch found
pdfbox_2995	Has diffs	Patch found	Patch found
sling_4982	Has diffs	Patch found	Patch found

NPEFix lost functionality over time as shown in the table below (left to right, oldest to latest):

Bug ID	da6f155	60298ca	d9b38d0 (v0.6)	1acca99	5992d4e (fr.inria.spirals v0.7)
felix-4960	Has diffs	Has diffs	java.lang.reflect.InvocationTargetException	java.lang.reflect.InvocationTargetException	java.lang.reflect.InvocationTargetException
lang304	Has diffs	Has diffs	Has diffs	Has diffs	Has diffs (but different)
lang587	Has diffs	No diffs	No diffs	No diffs	No diffs
lang703	Has diffs	No diffs	java.lang.reflect.InvocationTargetException	java.lang.reflect.InvocationTargetException	java.lang.reflect.InvocationTargetException
math290	Has diffs	Has diffs	java.lang.reflect.InvocationTargetException	java.lang.reflect.InvocationTargetException	java.lang.reflect.InvocationTargetException
math305	Has diffs	Has diffs	Has diffs	Has diffs	Has diffs (but different)
math369	Has diffs	Has diffs	Has diffs	Has diffs	Has diffs (but different)
pdfbox-2965	Has diffs	Has diffs	Has diffs	Has diffs	Has diffs (but different)
pdfbox-2995	Has diffs	Has diffs (but different result)	Has diffs (but different result)	Has diffs (but different^2 result)	Has diffs (but different^3 result)
sling-4982	Has diffs	Has diffs	Has diffs	Has diffs	Has diffs (but different)

To replicate configure the location of the dataset in src/main/resources/config.ini and run:

$ git checkout <commit-id>
$ mvn clean compile
$ mvn clean compile assembly:single
$ java -jar target/npefix-<version>-jar-with-dependencies.jar -p <bug-id>

My analysis:

• There are several bugs, introduced over time, that were/are affecting the outputs.
• I believe the executions bug in maven-repair is caused by the java.lang.reflect.InvocationTargetException exception.
• There might be a couple more bugs in the middle of all the changes

This analysis is WIP, I'll continue digging tomorrow and try to fix the exception bug.

[andre15silva]

I'm not being able to run the new version of NPEFix through the command line.

❯ java -jar target/npefix-0.8-SNAPSHOT-jar-with-dependencies.jar -c /home/andre/Repos/repairnator/npe-dataset/lang-703/target/test-classes/:/home/andre/Repos/repairnator/npe-dataset/lang-703/target/classes/:/home/andre/.m2/repository/junit/junit/4.7/junit-4.7.jar:/home/andre/.m2/repository/org/easymock/easymock/2.5.2/easymock-2.5.2.jar:/home/andre/.m2/repository/fr/inria/gforge/spirals/npefix/0.8-SNAPSHOT/npefix-0.8-SNAPSHOT.jar -t org.apache.commons.lang3.StringUtilsTest#testJoin_Objectarray -s /home/andre/Repos/repairnator
/npe-dataset/lang-703/src/main/java/org/org/apache/commons/lang3/StringUtils.java
RMI Selector (Host: localhost, Port: 10001): KO

[monperrus]

Thanks for the progress. Would you be able to identify the culprit commit with git bisset?

[andre15silva]

That's what I was trying to do essentially, but I'm not being able to run NPEFix through the new command line.

RMI Selector is always KO

Update: that's fixed :), I'll open a PR soon

[monperrus]

Yes, RMI was used by @tdurieux we had a lot of fun about it.

As far I remember, it's not necessary by default. So if I'm correct, there is no need to activate this selector and there must be a configuration to disable it (maybe it should be deactivated by default BTW)