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Add additional checks to check_cohort.nf #70

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calizilla opened this issue Dec 1, 2023 · 0 comments

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calizilla commented Dec 1, 2023

write script to check integrity of file
confirm tab separated
confirm correct number of columns
Confirm bams and BAI exist
Check the time stamp of the BAI vs BAM (to avoid Manta error 'The index file is older than the data file')

calizilla added the enhancement label

georgiesamaha added this to PIPE-3042 GermlineStructuralV (AusBioCommons)

georgiesamaha moved this to TODO in PIPE-3042 GermlineStructuralV (AusBioCommons)

georgiesamaha added a commit that referenced this issue


          Add samplesheet checker #70

d74ff8d

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