Error :running nextflow had issues

[yqlwqj]

Description of the bug

Hi , I am running
nextflow run systemsgenetics/entapnf --input xxx.fasta --data_ipr /home/xxx/xxx/interproscan/interproscan-5.59-91.0/data/antifam/7.0/.

It had following errors:Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'

Caused by:
Process SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta) terminated with an error exit status (1)

Command executed:

/usr/local/interproscan/interproscan.sh
--input 2085-NIS.9.fasta
--cpu 6
executor > local (2)
[b6/2e9530] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.22.fasta) [ 0%] 2 of 10030, failed: 2
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_combine -
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_config [ 0%] 0 of 1
[- ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_run -
Execution cancelled -- Finishing pending tasks before exit
-[systemsgenetics/entapnf] Pipeline completed with errors-
Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'

    It have more details error below .

     I have install interproscan-5.59-91.0 and nextflow  ~  version 22.10.3. I also run success for 	nextflow run systemsgenetics/entapnf -profile test.

      Would you advise how to fix this ?

Thanks

Command used and terminal output

$ nextflow run systemsgenetics/entapnf --input xxx.fasta --data_ipr /home/xxx/xxx/interproscan/interproscan-5.59-91.0/data/antifam/7.0/


Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'

Caused by:
  Process `SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)` terminated with an error exit status (1)

Command executed:

  /usr/local/interproscan/interproscan.sh \
      --input 2085-NIS.9.fasta \
      --cpu 6 \
executor >  local (2)
[b6/2e9530] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.22.fasta) [  0%] 2 of 10030, failed: 2
[-        ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_combine                 -
[-        ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_config                         [  0%] 0 of 1
[-        ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_run                            -
Execution cancelled -- Finishing pending tasks before exit
-[systemsgenetics/entapnf] Pipeline completed with errors-
Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'

Caused by:
  Process `SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)` terminated with an error exit status (1)

Command executed:

  /usr/local/interproscan/interproscan.sh \
      --input 2085-NIS.9.fasta \
      --cpu 6 \
executor >  local (2)
[b6/2e9530] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.22.fasta) [  0%] 2 of 10030, failed: 2
[-        ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_combine                 -
[-        ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_config                         [  0%] 0 of 1
[-        ] process > SYSTEMSGENETICS_ENTAPNF:ENTAPNF:entap_run                            -
Execution cancelled -- Finishing pending tasks before exit
-[systemsgenetics/entapnf] Pipeline completed with errors-
Error executing process > 'SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)'

Caused by:
  Process `SYSTEMSGENETICS_ENTAPNF:ENTAPNF:interproscan_pep (2085-NIS.9.fasta)` terminated with an error exit status (1)

Relevant files

System information

Nextflow 22.10.3
Ubuntu 22.04
Local
Docker