FUNCE throws error when trying to run more than one terms file

[JohnHadish]

Term List 1 Runs fine:

FUNC-E \
  --background "/home/jah/Documents/00-reference/07-Malus_x_domestica-genome_GDDH13_v1.1/Malus_x_domestica_GDDH13_v1.1_background.txt" \
  --query_list "/home/jah/Documents/05-galaapple_postharvesttreatment/04-Differential_Expression/61-tsv/91-maSigPro_CA.tsv" \
  --terms "/home/jah/Documents/00-reference/FUNC-E/terms/IPR.terms.txt" \
  --terms2features "/home/jah/Documents/00-reference/07-Malus_x_domestica-genome_GDDH13_v1.1/Malus_x_domestica_GDDH13_v1.1_genes2IPR.txt" \
  --ecut 0.01 \
  --outprefix "61-tsv/maSigPro_CA"

Term list 2, runs fine:

FUNC-E \
  --background "/home/jah/Documents/00-reference/07-Malus_x_domestica-genome_GDDH13_v1.1/Malus_x_domestica_GDDH13_v1.1_background.txt" \
  --query_list "/home/jah/Documents/05-galaapple_postharvesttreatment/04-Differential_Expression/61-tsv/91-maSigPro_CA.tsv" \
  --terms "/home/jah/Documents/00-reference/FUNC-E/terms/KEGG.terms.txt" \
  --terms2features "/home/jah/Documents/00-reference/07-Malus_x_domestica-genome_GDDH13_v1.1/Malus_x_domestica_GDDH13_v1.1_genes2KEGG.txt" \
  --ecut 0.01 \
  --outprefix "61-tsv/maSigPro_CA"

Combine the two as described in the documentation, does not run:

FUNC-E \
  --background "/home/jah/Documents/00-reference/07-Malus_x_domestica-genome_GDDH13_v1.1/Malus_x_domestica_GDDH13_v1.1_background.txt" \
  --query_list "/home/jah/Documents/05-galaapple_postharvesttreatment/04-Differential_Expression/61-tsv/91-maSigPro_CA.tsv" \
  --terms "/home/jah/Documents/00-reference/FUNC-E/terms/KEGG.terms.txt" \
  "/home/jah/Documents/00-reference/FUNC-E/terms/IPR.terms.txt" \
  --terms2features "/home/jah/Documents/00-reference/07-Malus_x_domestica-genome_GDDH13_v1.1/Malus_x_domestica_GDDH13_v1.1_genes2KEGG.txt" \
  "/home/jah/Documents/00-reference/07-Malus_x_domestica-genome_GDDH13_v1.1/Malus_x_domestica_GDDH13_v1.1_genes2IPR.txt" \
  --ecut 0.01 \
  --outprefix "61-tsv/maSigPro_CA"

Error message for the combined:

AttributeError: 'float' object has no attribute 'log'

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/jah/.local/bin/FUNC-E", line 8, in <module>
    sys.exit(func_e())
  File "/home/jah/.local/lib/python3.10/site-packages/func_e/cmd.py", line 100, in func_e
    fe.run(modules=args.module, vocabs=args.vocab)
  File "/home/jah/.local/lib/python3.10/site-packages/func_e/FUNC_E.py", line 241, in run
    self.doClustering(modules)
  File "/home/jah/.local/lib/python3.10/site-packages/func_e/FUNC_E.py", line 605, in doClustering
    self.doModuleClustering(module)
  File "/home/jah/.local/lib/python3.10/site-packages/func_e/FUNC_E.py", line 580, in doModuleClustering
    stats = self._calculateClusterStats(final_clusters, module)
  File "/home/jah/.local/lib/python3.10/site-packages/func_e/FUNC_E.py", line 528, in _calculateClusterStats
    gmean = stats.gmean(eterms['Fishers_pvalue'])
  File "/home/jah/.local/lib/python3.10/site-packages/scipy/stats/_axis_nan_policy.py", line 503, in axis_nan_policy_wrapper
    res = hypotest_fun_out(*samples, **kwds)
  File "/home/jah/.local/lib/python3.10/site-packages/scipy/stats/_stats_py.py", line 307, in gmean
    log_a = np.log(a)
TypeError: loop of ufunc does not support argument 0 of type float which has no callable log method