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Description
I run KINC-nf with the following arguments:
nextflow run systemsgenetics/kinc-nf \
-r master \
-profile singularity,kamiak \
--input_dir "GEM.GEM.TPM_clean" \
--graph_name "Gala_Apple" \
--data_missing_val "NA" \
--similarity_clusmethod "gmm" \
--similarity_minsamp 12 \
--similarity_maxclus 6 \
--condtest_feat_tests "Treatment.ID.P,Short_Long,MCP,CA,Days.Postharvest" \
--condtest_feat_types "Days.Postharvest:ordinal" \
--max_cpus 100 \
--max_gpus 0
and the output log says that condtest will be ran:
cond-test
enabled: true
chunks: 4
feat_tests: Treatment.ID.P,Short_Long,MCP,CA,Days.Postharvest
feat_types: Days.Postharvest:ordinal
alpha: 0.001
power: 0.8
But condtest is not ran and KINC-nf completes without any errors:
[- ] process > import_emx -
[- ] process > similarity_chunk -
[- ] process > similarity_merge -
[2d/ce094a] process > corrpower (GEM.GEM.TPM_clean) [100%] 1 of 1 ✔
[- ] process > condtest -
[- ] process > extract -
Completed at: 16-Oct-2022 19:38:07
Duration : 3h 32m 37s
CPU hours : 3.5
Succeeded : 1
Request: if KINC-nf is not able to run condtest for some reason, it should fail and tell the user why it failed
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