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Not clear why KINC-nf not running cond-test #7

@JohnHadish

Description

@JohnHadish

I run KINC-nf with the following arguments:

nextflow run systemsgenetics/kinc-nf \
	-r master \
	-profile singularity,kamiak  \
	--input_dir "GEM.GEM.TPM_clean" \
	--graph_name "Gala_Apple" \
	--data_missing_val "NA" \
	--similarity_clusmethod "gmm" \
        --similarity_minsamp 12 \
	--similarity_maxclus 6 \
	--condtest_feat_tests "Treatment.ID.P,Short_Long,MCP,CA,Days.Postharvest" \
	--condtest_feat_types "Days.Postharvest:ordinal" \
	--max_cpus 100 \
	--max_gpus 0 

and the output log says that condtest will be ran:

cond-test
  enabled:        true
  chunks:         4
  feat_tests:     Treatment.ID.P,Short_Long,MCP,CA,Days.Postharvest
  feat_types:     Days.Postharvest:ordinal
  alpha:          0.001
  power:          0.8

But condtest is not ran and KINC-nf completes without any errors:

[-        ] process > import_emx                    -
[-        ] process > similarity_chunk              -
[-        ] process > similarity_merge              -
[2d/ce094a] process > corrpower (GEM.GEM.TPM_clean) [100%] 1 of 1 ✔
[-        ] process > condtest                      -
[-        ] process > extract                       -
Completed at: 16-Oct-2022 19:38:07
Duration    : 3h 32m 37s
CPU hours   : 3.5
Succeeded   : 1

Request: if KINC-nf is not able to run condtest for some reason, it should fail and tell the user why it failed

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