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We added the "--authz" option so that developers can change ACLs, then blow away the old ones and load the new ones without having to reset the entire DB.
I am seeing this behavior:
$ ./manage.py resetdb
$ ./manage.py setup precor
things work as expected. Then:
$ ./manage.py setup precor --authz
permissions change. I specifically see that for the Org Administrator, they can no longer read the Organization table.