AttributeError: module 'torchio' has no attribute 'ScalarImage'

[r2chel]

[fepegar]

Hi, @r2chel. Instead of editing your question to leave it empty, could you please share your problem and how you solved it?

[r2chel]

Sorry, I tried to delete it entirely because I think the issue was on my end (things not being updated etc). I keep getting an attribute error saying: AttributeError: module 'torchio' has no attribute 'ScalarImage' When I tried to run the code posted here: https://stackoverflow.com/questions/64674612/how-to-resize-a-nifti-nii-gz-medical-image-file with my own image. I didn't want to post until I could put enough useful information. ***@***.***?v=73d79a89bded]<https://stackoverflow.com/questions/64674612/how-to-resize-a-nifti-nii-gz-medical-image-file> How to resize a nifti (nii.gz medical image) file - Stack Overflow<https://stackoverflow.com/questions/64674612/how-to-resize-a-nifti-nii-gz-medical-image-file> I have some medical images of nii.gz format which are of different shapes. I want to resize all to the same shape inorder to feed to a deep learnig model, I tried using resample_img() of nibabel, b... stackoverflow.com Rachel Chua | Undergraduate Research Assistant Undergraduate Neuroscience Program UAB | The University of Alabama at Birmingham P: 256.658.8537 | ***@***.******@***.***> ***@***.***>

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________________________________ From: Fernando Pérez-García ***@***.***> Sent: Monday, May 24, 2021 2:46 PM To: fepegar/torchio ***@***.***> Cc: Chua, Rachel A ***@***.***>; Mention ***@***.***> Subject: Re: [fepegar/torchio] AttributeError: module 'torchio' has no attribute 'ScalarImage' (#554) Hi, @r2chel<https://github.com/r2chel>. Instead of editing your question to leave it empty, could you please share your problem and how you solved it? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#554 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AQQP54MRULAWSR6PEZ5DLHLTPKUIVANCNFSM45NVTRLQ>.

[fepegar]

You might have an old version of torchio. Could you please check your installed version with print(tio.__version__)?

[fepegar]

Also, it would be helpful if you could provide a minimal working example to reproduce your error.

[r2chel]

[cid:7a0b50f5-9676-46ee-a970-2aa2adba9d27] Found existing installation: torchio 0.18.34 Rachel Chua | Undergraduate Research Assistant Undergraduate Neuroscience Program UAB | The University of Alabama at Birmingham P: 256.658.8537 | ***@***.******@***.***> ***@***.***>

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________________________________ From: Fernando Pérez-García ***@***.***> Sent: Monday, May 24, 2021 2:58 PM To: fepegar/torchio ***@***.***> Cc: Chua, Rachel A ***@***.***>; Mention ***@***.***> Subject: Re: [fepegar/torchio] AttributeError: module 'torchio' has no attribute 'ScalarImage' (#554) Also, it would be helpful if you could provide a minimal working example to reproduce your error. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#554 (reply in thread)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AQQP54KSO3EWXQYSAPTDEPDTPKVVRANCNFSM45NVTRLQ>.

[r2chel]

I upgraded to 0.18.39 and am having the same issue. Rachel Chua | Undergraduate Research Assistant Undergraduate Neuroscience Program UAB | The University of Alabama at Birmingham P: 256.658.8537 | ***@***.******@***.***> ***@***.***>

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________________________________ From: Chua, Rachel A ***@***.***> Sent: Monday, May 24, 2021 3:05 PM To: fepegar/torchio ***@***.***> Subject: Re: [fepegar/torchio] AttributeError: module 'torchio' has no attribute 'ScalarImage' (#554) [cid:7a0b50f5-9676-46ee-a970-2aa2adba9d27] Found existing installation: torchio 0.18.34 Rachel Chua | Undergraduate Research Assistant Undergraduate Neuroscience Program UAB | The University of Alabama at Birmingham P: 256.658.8537 | ***@***.******@***.***> ***@***.***>

________________________________ From: Fernando Pérez-García ***@***.***> Sent: Monday, May 24, 2021 2:58 PM To: fepegar/torchio ***@***.***> Cc: Chua, Rachel A ***@***.***>; Mention ***@***.***> Subject: Re: [fepegar/torchio] AttributeError: module 'torchio' has no attribute 'ScalarImage' (#554) Also, it would be helpful if you could provide a minimal working example to reproduce your error. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#554 (reply in thread)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AQQP54KSO3EWXQYSAPTDEPDTPKVVRANCNFSM45NVTRLQ>.

[fepegar]

Please open a new issue using the Bug report template and follow all the instructions, so we can help you.