Fix parameters initialisation

Author: marghe-molaro

resources/ResourceFile_GenerateEventChains/parameter_values.csv

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:fbb13b64e27d6ba81ff4bc779e4c50f0dda63b784ec7cc1790ddb64777fb9f35
-size 242
+oid sha256:788332259649a19889355820b194fe0d16af44436f208e3a948e833f0ad5139a
+size 419

src/tlo/methods/collect_event_chains.py

@@ -47,13 +47,12 @@ def initialise_simulation(self, sim):
         notifier.add_listener("event.has_just_ran", self.on_notification_event_has_just_ran)
 
     def read_parameters(self, resourcefilepath: Optional[Path] = None):
-        #print("resource file path", resourcefilepath)
-        #self.load_parameters_from_dataframe(pd.read_csv(resourcefilepath/"ResourceFile_GenerateEventChains/parameter_values.csv"))
-        self.parameters["generate_event_chains"] = True
-        self.parameters["modules_of_interest"] = self.sim.modules.keys()
-            
-        self.parameters["events_to_ignore"] =["AgeUpdateEvent","HealthSystemScheduler","SimplifiedBirthsPoll","DirectBirth","LifestyleEvent","TbActiveCasePollGenerateData","HivPollingEventForDataGeneration","RTIPollingEvent"]
+        print("resource file path", resourcefilepath)
+        self.load_parameters_from_dataframe(pd.read_csv(resourcefilepath/"ResourceFile_GenerateEventChains/parameter_values.csv"))
 
+        # If modules of interest is '*', set by default to all modules included in the simulation
+        if self.parameters["modules_of_interest"] == ['*']:
+            self.parameters["modules_of_interest"] = self.sim.modules.keys()
 
     def initialise_population(self, population):
         pass