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Getting started

• Installation and setup guide
• Introduction to PyCharm, Git and GitHub
• Azure Batch
• Setting up test run configurations with PyCharm
• How to do a model analysis
• Running on Myriad cluster (UCL only)
• Running on DIDE cluster (ICL only)

Developer guidance

• Checklist for Developing a Disease Module
• Conventions used in design of disease modules
• Implementing a disease module
• Specifying dependencies between modules
• Things to do before submitting a pull request for a new disease module

Key utility modules

• Using the LinearModel helper class
• Structured logging
• Symptom Manager
• Diagnostic Tests Manager
• Declaring Causes of Death
• Using Consumables
• In-patient Bed-days

General help and tips

• Checking numbers of deaths for calibration
• Template for running model locally
• Working with Dataframes in Pandas
• Cookbook
• Useful resources for background
• Adding or updating publications on website